Locus 2094

Sequence ID 3L_DroMel_CAF1
Location 5,758,853 – 5,758,973
Length 120
Max. P 0.919018
window3260

overview

Window 0

Location 5,758,853 – 5,758,973
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.24
Mean single sequence MFE -31.44
Consensus MFE -25.94
Energy contribution -26.46
Covariance contribution 0.52
Combinations/Pair 1.09
Mean z-score -1.78
Structure conservation index 0.83
SVM decision value 1.12
SVM RNA-class probability 0.919018
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5758853 120 + 23771897
UUGAAAUUGGUUCAAGGUCCCAGUGAUCUCAAGGCGAACGCCACCGGAUCACGGAUCGUUGUAAUUUGCAAAUAUUUGCUAAUUAAAACUCGCGUAUGAGACGCGUUUUUGUUAAAACAG
(((((.....)))))(((((..(((((((...(((....)))...))))))))))))(((.(((((.((((....)))).))))).)))..((((.....))))(((((....))))).. ( -35.90)
>DroSec_CAF1 1421 120 + 1
UCGAAAUUAGUUCAAGGUCCCAGUGAUCUCAAGGCGAACGCCACCGGAUCACGGAUCGCUGUAAUUUGCAAAUAUUUGCUAAUUAAAACUCGCGUAUGAGACGCGUUUUUGUUAAAACAG
....(((((((....(((((..(((((((...(((....)))...))))))))))))((........))........))))))).......((((.....))))(((((....))))).. ( -33.80)
>DroSim_CAF1 1182 120 + 1
UUGAAAUUAGUUCAAGGUCCCAGUGAUCUCAAGGCGAACGCCACCGGAUCACGGAUCGCUGUAAUUUGCAAAUAUUUGCUAAUUAAAACUCGCGUUUGAGACGCGUUUUUGUUAAAACAG
(((((.....)))))(((((..(((((((...(((....)))...)))))))))))).((((((((.((((....)))).)))).(((..((((((...))))))..)))......)))) ( -34.50)
>DroEre_CAF1 1438 118 + 1
UAGAAAUUAGUUCAAGGUCCCAGUGAUCUCAAGGCGAACGCCACCGGAUCACGAAUCGCUGUAAUUUGCAAAUAUUUGCUAAUUAAAACUCGG--CAGAGAGGCGUUUUUGUUAAAACAG
.........((((..(....).(((((((...(((....)))...))))))))))).(((.(((((.((((....)))).)))))...(((..--..))).)))(((((....))))).. ( -28.70)
>DroAna_CAF1 1363 118 + 1
ACCAAAUUAGUUCAAGGUCCCAUAGAUCUCAAGGCGAACGCCACCGGAUCAUGGAUCGCUGUAAUUUGCAAAUAUUUGUUAAUUAAAACUCAC--AAGAGACUCGGAUUUAUUAAAACGA
....(((.(((((..(((((.((.(((((...(((....)))...))))))))))))....(((((.((((....)))).)))))...(((..--..)))....))))).)))....... ( -24.30)
>consensus
UCGAAAUUAGUUCAAGGUCCCAGUGAUCUCAAGGCGAACGCCACCGGAUCACGGAUCGCUGUAAUUUGCAAAUAUUUGCUAAUUAAAACUCGCGUAUGAGACGCGUUUUUGUUAAAACAG
....(((((((....(((((..(((((((...(((....)))...))))))))))))((........))........)))))))....(((......)))....(((((....))))).. (-25.94 = -26.46 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:14 2006