Locus 2093

Sequence ID 3L_DroMel_CAF1
Location 5,757,623 – 5,757,743
Length 120
Max. P 0.803445
window3259

overview

Window 9

Location 5,757,623 – 5,757,743
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.17
Mean single sequence MFE -42.66
Consensus MFE -35.35
Energy contribution -37.10
Covariance contribution 1.75
Combinations/Pair 1.13
Mean z-score -1.77
Structure conservation index 0.83
SVM decision value 0.62
SVM RNA-class probability 0.803445
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5757623 120 - 23771897
CGUCAGUUCCAAGAUGAAGAACCGCCUGAUCAUCUACGGCAGCGAGAAGGAGCUGAUGAAGAGCGUGGACCAGGGCUGUCUGCCGCUGGAAAUGGGUGGCAAGGUGCCCAUGCGCGAGAU
((((((((((.((((((((......))..)))))).((....))....))))))))))....((((...(((((((.....))).))))..((((((........))))))))))..... ( -47.00)
>DroSec_CAF1 200 120 - 1
CGUCAGUUCCAAGAUGAAGAACCGCCUGAUCAUCUACGGCAGCGAGAAUGAGCUGAUGAAGAGAGUGGACCAGGGCUGUCUGCCGCUGGAAAUGGGUGGCAAGGUGCCCAUGCGCGAGAU
(((((((((..((((((((......))..)))))).((....)).....)))))))))......(((..(((((((.....))).))))..((((((........)))))).)))..... ( -39.30)
>DroSim_CAF1 1 95 - 1
CGUCAGUUCCAAGAUGAAGAACCGCCUGAUCAUCUACGGCAGCGAGAAGGAGCUGAUGAAGAGCGUGGACCAGGGCUGUCUGCCGCUGGAAAUGG-------------------------
((((((((((.((((((((......))..)))))).((....))....)))))))))).....(((...(((((((.....))).))))..))).------------------------- ( -33.90)
>DroEre_CAF1 201 120 - 1
CGUCAGUUCCAAGAUGAAGAACCGCCUGAUCAUCUACGGAAGCGAAAAGGAGCUGAUGAAGUGCGUGGAUCAGGGCUGUCUGCCCCAGGAAAUGGGUGGCAAAAUGCCCAUGCGUGAGAU
((((((((((.((((((((......))..)))))).((....))....))))))))))....((((...((.((((.....))))...)).(((((((......)))))))))))..... ( -42.30)
>DroAna_CAF1 197 120 - 1
CGUCAGCUCCAAGAUGAAGAACCGUCUCAUCAUCUACGGCAGCGAAAAGGAGUUGAUGAAGGGCGUGGAUCCGGGCUGUUUGCCCCUGGAGAUGGGCGGAACUAUGCCCAUGCGCGAGAU
((((((((((.((((((.((......)).)))))).((....))....))))))))))..((((((((.(((((((.....)))(((......))))))).))))))))...(....).. ( -50.80)
>consensus
CGUCAGUUCCAAGAUGAAGAACCGCCUGAUCAUCUACGGCAGCGAGAAGGAGCUGAUGAAGAGCGUGGACCAGGGCUGUCUGCCGCUGGAAAUGGGUGGCAAGAUGCCCAUGCGCGAGAU
((((((((((.((((((((......))..)))))).((....))....))))))))))....((((...(((((((.....))).))))..(((((((......)))))))))))..... (-35.35 = -37.10 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:12 2006