Locus 2092

Sequence ID 3L_DroMel_CAF1
Location 5,755,580 – 5,755,670
Length 90
Max. P 0.993781
window3258

overview

Window 8

Location 5,755,580 – 5,755,670
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 71.54
Mean single sequence MFE -38.02
Consensus MFE -18.05
Energy contribution -19.00
Covariance contribution 0.95
Combinations/Pair 1.27
Mean z-score -2.53
Structure conservation index 0.47
SVM decision value 2.42
SVM RNA-class probability 0.993781
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5755580 90 - 23771897
CCCACUCGCACGGCUAUGUGGCUGGAGUCCAUGGCUAGACCGCUCUGGC------UGCAG---CCUCGGCAUCAAGGUGGUGCUGUG-AGUGGGUCAGCU
(((((((((........(.(((((.((.(((.(((......))).))))------).)))---)).)((((((.....)))))))))-))))))...... ( -45.00)
>DroSec_CAF1 3757 77 - 1
CCCACUCGCACGGCUAUGUGGCUGGAGUCCAUGA--------------C------UGCAG---CCUCGGCAUCAAGGUGGUGCUGUGGAGUGGGUCAGCU
(((((((.((((((..((.(((((.((((...))--------------)------).)))---)).)).(((....)))..)))))))))))))...... ( -39.60)
>DroSim_CAF1 3875 77 - 1
CCCACUCGCACGGCUAUGUGGCUGGAGUCCAUGA--------------C------UGCAG---CCUCGGCAUCAAGGUGGUGCUGUGGAGUGGGUCAGCU
(((((((.((((((..((.(((((.((((...))--------------)------).)))---)).)).(((....)))..)))))))))))))...... ( -39.60)
>DroEre_CAF1 3746 100 - 1
CCCGCUCGCACGGCUAUGUGACUGGAGUCCAUGGCUAAACGGCUCUGGCUGCAUCUGCAUCUGCCUGGGCAUCAAGGUGGUGUCGUGGAGUGGGUCAGCU
(((((((.((((((.(((((..((.((.(((.((((....)))).))))).))..)))))..)))..((((((.....))))))))))))))))...... ( -43.70)
>DroYak_CAF1 3658 80 - 1
CCCGCUCGCACGGCUAUGUGGCUGGAGUCCAUGGC--------------------UGCAGCCUCGUCGGCAUCAAGGUGCUGCUGUGCACUGGGUCAACU
((((...(((((((.(((.(((((.(((.....))--------------------).))))).))).(((((....))))))))))))..))))...... ( -37.90)
>DroPer_CAF1 4513 72 - 1
CCCGCGAUCACUGCACUCUGGUUGGAAUCCAUGAC--------------------UGCUC---UGAUGGCUUCCCGG-----AUGAGUGGUGGUUCAGCU
...((((((((..(.((((((...(((.((((.(.--------------------.....---).)))).)))))))-----).).)..))))))..)). ( -22.30)
>consensus
CCCACUCGCACGGCUAUGUGGCUGGAGUCCAUGAC_____________C______UGCAG___CCUCGGCAUCAAGGUGGUGCUGUGGAGUGGGUCAGCU
(((((((.((((((((((.(((....))))))).......................((..........))...........)))))))))))))...... (-18.05 = -19.00 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:11 2006