Locus 2091

Sequence ID 3L_DroMel_CAF1
Location 5,754,517 – 5,754,620
Length 103
Max. P 0.512639
window3257

overview

Window 7

Location 5,754,517 – 5,754,620
Length 103
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 80.63
Mean single sequence MFE -38.02
Consensus MFE -26.82
Energy contribution -27.77
Covariance contribution 0.95
Combinations/Pair 1.29
Mean z-score -1.16
Structure conservation index 0.71
SVM decision value -0.04
SVM RNA-class probability 0.512639
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5754517 103 + 23771897
---UAAUUUCAUAUCU-----CCACAGGUCGUUGGAUUUGGGUGGGCAAUUGCCUGCACAAGACGGCGGUGGCCACUGGAGUGGUUUCCCUGGUGGCCAGCUUGCUGUGGC
---.............-----((((((((((((....(((.(..(((....)))..).)))))))))(.((((((((((((....))))..)))))))).)...)))))). ( -45.60)
>DroSec_CAF1 2700 103 + 1
---UGAUUUCAUAUCU-----UCACAGGUCGUUGGAUUUGGGUGGGCAAUUGCCUGCACAAGACGGCGGUGGCCACUGGAGUGGUUUCCCUGGUGGCCAGCUUGCUGUGGC
---.............-----((((((((((((....(((.(..(((....)))..).)))))))))(.((((((((((((....))))..)))))))).)...)))))). ( -43.50)
>DroEre_CAF1 2677 103 + 1
---GAAUUACUUUUCU-----UCACAGGUCGCUGGAUUUGGGUGGGCAACUGCCUGCACAAGACGGCGGUGGCCACUGGAGUGGUUUCCCUGGUGGCCAGCUUGCUCUGGC
---(((......))).-----...(((..(((((..((((.(..(((....)))..).)))).))))(.((((((((((((....))))..)))))))).)..)..))).. ( -40.90)
>DroWil_CAF1 2824 111 + 1
UGACAAUUUGUUAUCCAUUUGUUGUAGGUCGUUGGAUUUGGGUUGGCAAUUGCCUACAUAAGACUGCUGUGGCAUCGGGCGCUGUCUCCUUGGUGGCCAGUUUACUGUGGC
((((.....)))).((((..(((((((((.((((............)))).)))))))..(((((((....))...((.(((((......))))).))))))))).)))). ( -27.40)
>DroYak_CAF1 2601 103 + 1
---UGACUACCUAUCC-----UCACAGGUCGUUGGAUCUGGGUGGGCAACUGCCUGCACAAGACGGCGGUGGCCAAUGGAGUGAUUGCCAUGGUGGCCAGCUUGCUCUGGC
---......((.....-----...((((((....))))))((..(((.((((((..(....)..))))))(((((((((........))))..))))).)))..))..)). ( -37.40)
>DroAna_CAF1 2652 103 + 1
---UAAUUUCUUAACC-----GAUUAGGGCGAUGGAUUUGGGUUGGAAAUUGCUUGCACAAGACCGCUGUGGCCACUGGAGUGGUCUCGUUGGUGGCCAGCCUGCUUUGGC
---...........((-----((...((((...((.((((.((.((......)).)).)))).))....((((((((.(((....)))...))))))))))))...)))). ( -33.30)
>consensus
___UAAUUUCUUAUCC_____UCACAGGUCGUUGGAUUUGGGUGGGCAAUUGCCUGCACAAGACGGCGGUGGCCACUGGAGUGGUUUCCCUGGUGGCCAGCUUGCUGUGGC
........................((((.(((((..((((.((((((....)))))).)))).))))..((((((((((((....))))..)))))))))))))....... (-26.82 = -27.77 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:10 2006