Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,748,627 – 5,748,724 |
Length | 97 |
Max. P | 0.656875 |
Location | 5,748,627 – 5,748,724 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 80.75 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -15.35 |
Energy contribution | -16.30 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.24 |
Mean z-score | -2.15 |
Structure conservation index | 0.55 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656875 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5748627 97 + 23771897 AAAUACAAAUAAUACGAUUACCCCGAAUAGUCUGUGAUGGCUGCGUUGCUGGUAUCCGUUCCCAACCGGGCGGUCA---CCACAACGC--GUCCUCCGUUCA ........................((((((((......))))((((((.((((..((((((......))))))..)---)))))))))--.......)))). ( -29.00) >DroSec_CAF1 7524 97 + 1 AAAUACAAACAAUACGAUUACCCGGAAUAGUCUGUGAUGACUGCGUUGCUGGUAUCCGUUCCCAACCGGUCGGGCA---CCACAACGC--GUCCUCCGUUCA ......................((((..((((......))))((((((.((((..(((..((.....)).)))..)---)))))))))--....)))).... ( -30.90) >DroSim_CAF1 7500 97 + 1 AAAUACAAACAAUACGAUUACCCCGAAUAGUCUGUGAUGACUGCGUUGCUGGUAUCCGUUCCCAACCGGGCGGGCA---CCACAACGC--GUCCUCUGUUCA ........................((((((........(((.((((((.((((..((((((......))))))..)---)))))))))--)))..)))))). ( -31.50) >DroEre_CAF1 7513 93 + 1 -AAUACAAACGAUACGAUUACCCCGAAUAGUCUGUGAU---UGCGUUGAUGGUAUCCGUUCUCAACCGGGCGGACA---CCACAACGC--GUCCUCCGUUCA -......((((.((((((((.......))))).)))..---.((((((.((((.(((((((......))))))).)---)))))))))--......)))).. ( -30.10) >DroYak_CAF1 7535 93 + 1 -AAUACAAACGAUACGAUUACCCCGAAUAGUCUGUGAU---UGCGUUGAUGGUAUCCGUACCCAACCGGGUGGACA---CCACAACGC--GUCCUCCGUUCA -......((((.((((((((.......))))).)))..---.((((((.((((.(((..((((....))))))).)---)))))))))--......)))).. ( -28.60) >DroPer_CAF1 7804 86 + 1 GAAUACGA---AUACGAAU-------AUAGUCUGUGAU---UGCUUUGAAGUUAUCCAUC--CAUC-CGUUGGACAGAUCUUCAAUGCUCGGCCCCCCGAAA ........---........-------............---.((.((((((..(((..((--((..-...))))..))))))))).))((((....)))).. ( -17.30) >consensus AAAUACAAACAAUACGAUUACCCCGAAUAGUCUGUGAU___UGCGUUGAUGGUAUCCGUUCCCAACCGGGCGGACA___CCACAACGC__GUCCUCCGUUCA ........................((((.(...(.(((....((((((.(((..(((((((......))))))).....)))))))))..)))).).)))). (-15.35 = -16.30 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:07 2006