Locus 2088

Sequence ID 3L_DroMel_CAF1
Location 5,746,081 – 5,746,201
Length 120
Max. P 0.572102
window3253

overview

Window 3

Location 5,746,081 – 5,746,201
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.89
Mean single sequence MFE -40.52
Consensus MFE -24.71
Energy contribution -23.89
Covariance contribution -0.82
Combinations/Pair 1.62
Mean z-score -1.89
Structure conservation index 0.61
SVM decision value 0.08
SVM RNA-class probability 0.572102
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5746081 120 + 23771897
CUACAAAGAGCUGGAUCAGUUGGUUAAGGAGACCACGCCGCUGGGACAGAUCUUUGGCGGCUAUCUGCGCAGCGAGGUGCGCUGUCUGAGCUGCAACCAUGUGUCCAUUACGUUUCAGCA
.........((((((.((((.(((...(....)...)))))))(((((.((.....((((((....(.((((((.....)))))))..))))))....)).))))).......)))))). ( -43.70)
>DroVir_CAF1 2408 120 + 1
UUUCAAAGAGCUCGAUCAGCUGGUGAAGGAGACGACGCCAAUUAGUCAAAUCUUUGGCGGCUAUCUGCGCAGCGAGGUGCGCUGCCUCAGCUGCAAUCAUGUCUCGAUUACGUUUCAACA
(((((...((((.....))))..)))))((((((.((((((............))))))((.....))((((((((((.....))))).))))).....))))))............... ( -40.40)
>DroPse_CAF1 4871 120 + 1
CUUCAAGGAGCUAGAUCAGCUGGUGAAGGAGACGACCCCACUGAAUCAGAUAUUCGGUGGCUACCUGCGCAGCGAGGUGCGUUGCCUCAGCUGCAGCCACGUCUCAAUCACCUUCCAGCA
......((((((.....))).(((((..((((((...(((((((((.....)))))))))......((((((((((((.....))))).))))).))..))))))..))))).))).... ( -52.20)
>DroGri_CAF1 2429 120 + 1
CUACAAAGAGCUCGAUCAGUUGGUGAAAGAGACGACGCCGUUGAAUCAAAUCUUUGGUGGCUAUCUGCGCAGCGAGGUGCGCUGCCUGAGCUGUAAUCAUGUCUCGAUAACGUUUCAACA
..................((((((....((((((.(((((..((......))..)))))(((....(.((((((.....)))))))..)))........))))))....))....)))). ( -32.40)
>DroWil_CAF1 5978 120 + 1
CUAUAAGGAAUUGGAUCAAUUGGUUAAGGAGACAACGCCGCUGAAUCAAAUAUUCGGUGGUUAUCUAAGAAGUGAAGUUCGUUGUUUGAGUUGUAAUCAUGUAUCGAUUACGUUUCAACA
..((((.(((((..((...((((.((.(....)...((((((((((.....)))))))))))).))))...))..))))).))))(((((.(((((((.......))))))).))))).. ( -30.60)
>DroMoj_CAF1 2328 120 + 1
CUACAAAGAACUUGAUCAGCUGGUGAAGGAGACGACGCCGCUGAGUCAAAUCUUUGGUGGCUAUUUGCGUAGCGAGGUUCGCUGCCUUAGCUGCAAUCAUGUCUCGAUUACGUUUCAACA
...((((((..(((((((((.((((..(....)..))))))))).)))).))))))(..((((...(.((((((.....))))))).))))..)((((.......))))........... ( -43.80)
>consensus
CUACAAAGAGCUCGAUCAGCUGGUGAAGGAGACGACGCCGCUGAAUCAAAUCUUUGGUGGCUAUCUGCGCAGCGAGGUGCGCUGCCUGAGCUGCAAUCAUGUCUCGAUUACGUUUCAACA
..................(((((.....((((((..(((((((((.......))))))))).......(((((.((((.....))))..))))).....)))))).........))))). (-24.71 = -23.89 +  -0.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:06 2006