Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,740,489 – 5,740,609 |
Length | 120 |
Max. P | 0.705192 |
Location | 5,740,489 – 5,740,609 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.39 |
Mean single sequence MFE | -34.81 |
Consensus MFE | -21.79 |
Energy contribution | -19.85 |
Covariance contribution | -1.94 |
Combinations/Pair | 1.47 |
Mean z-score | -2.32 |
Structure conservation index | 0.63 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5740489 120 + 23771897 UUGCGAUGAGCAGCUCAUCCUGUCCAUCACCUUUAAUCAGGCUGUGAAGAUCCACUCUUUGAAGUUCAAGGCACCUUCGCACCUGGGUCCCAAGGAUGUGAAGCUGUUCAUUAACCAGCC ....(((((((((((((((((.......(((......((((.(((((((.......(((((.....)))))...))))))))))))))....))))))...)))))))))))........ ( -39.20) >DroPse_CAF1 21266 120 + 1 CUGCGAUGAGCAGCUGAUCUUAUCCAUCACUUUCAACCAGGCAGUAAAGAUCCAUUCGUUAAAGUUCAAAGCCCCGUCGCAGCUGGGUCCCAAGGAUGUAAAGCUGUUCAUCAACCAGCC ....(((((((((((.....(((((...(((.((.....)).)))...((((((((((.....((.....)).....)).)).))))))....)))))...)))))))))))........ ( -32.10) >DroEre_CAF1 10266 120 + 1 CUGCGAUGAGCAGCUGAUCCUGUCCAUCACCUUUAAUCAGGCUGUGAAGAUUCACUCCCUGAAGUUCAAGGCGCCUUCGCAACUAGGUCCCAAGGAUGUCAAGCUGUUCAUCAACCAGCC ....((((((((((((((...((((...........(((((..((((....))))..))))).......((.((((........)))).))..))))))).)))))))))))........ ( -43.90) >DroWil_CAF1 11900 120 + 1 UUGUGAUGAGCAAUUGAUCAUGUCCAUUACAUUCAAUCAGGCGGUUAAAAUACAUUCUCUGAAAUUCAAGGCACCCGUCCAAUUGGGACCUAAAGAUGUGAAAUUGUUUAUUAAUCAACC ...((((((((((((..(((((((............(((((..((........))..)))))......(((..((((......)))).)))...)))))))))))))))))))....... ( -27.70) >DroAna_CAF1 9871 120 + 1 UUGUGAUGAACAGCUCAUCCUGUCCAUCACCUUCAACCAGGCUGUGAAGAUCCACUCGCUUAAGUUUAAGGCACCGUCACAACUUGGUCCCAAGGAUGUCAAGCUUUUCAUCAACCAGCC ...(((((((.((((((((((..............((((((.(((((.((.....))((((.......))))....))))).))))))....))))))...)))).)))))))....... ( -33.87) >DroPer_CAF1 18416 120 + 1 CUGCGAUGAGCAGCUGAUCUUAUCCAUCACUUUCAACCAGGCAGUAAAGAUCCAUUCGUUAAAGUUCAAAGCCCCGUCGCAGCUGGGUCCCAAGGAUGUAAAGCUGUUCAUCAACCAGCC ....(((((((((((.....(((((...(((.((.....)).)))...((((((((((.....((.....)).....)).)).))))))....)))))...)))))))))))........ ( -32.10) >consensus CUGCGAUGAGCAGCUGAUCCUGUCCAUCACCUUCAACCAGGCUGUGAAGAUCCACUCGCUGAAGUUCAAGGCACCGUCGCAACUGGGUCCCAAGGAUGUAAAGCUGUUCAUCAACCAGCC ....(((((((((((.....(((((....((((.(((..((..((........))...))...))).))))..(((........)))......)))))...)))))))))))........ (-21.79 = -19.85 + -1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:05 2006