| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,737,646 – 5,737,764 |
| Length | 118 |
| Max. P | 0.924215 |
| Location | 5,737,646 – 5,737,764 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.70 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -21.09 |
| Energy contribution | -21.28 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5737646 118 + 23771897 UGACUGAGCAUGCCCUCAAUGGGCUUGCACUUAUACGACUCGCUGAUUUGUUGCACUGCAUCGGUGAGGGAGUAGUUCUGUAAGGAUACAGAAUUGAAACAUAAAUAUUAAGUAUGAA .......(((.((((.....)))).)))..((((((..((((((((..(((......)))))))))))(...((((((((((....))))))))))...)...........)))))). ( -39.50) >DroVir_CAF1 7605 108 + 1 UGACUAAGCAUGCCCUCAAUGGGCUUACACUUGUACGAUUCGCUGAUUUGUUGCACGGCAUCGGUGAUUGAGUAAUUCUGAAAGAAAG-ACA--AACAAUAAA----GGCAU---UAA .......((..((((.....))))......((((.((((.((((((..((((....)))))))))))))).((..(((.....)))..-)).--.))))....----.))..---... ( -23.80) >DroGri_CAF1 7783 112 + 1 UGACUGAGCAUGCCCUCAAUGGGCUUGCACUUGUACGACUCGCUGAUCUGUUGCACGGCAUCGGUGAUUGAGUAAUUCUGCAAAAAUA-AAA--CACAAAAAU---ACCCAAACGUCA .(((...(((.((((.....)))).)))..((((.(((.(((((((((((.....))).))))))))))).(((....))).......-...--.))))....---........))). ( -31.00) >DroEre_CAF1 7412 97 + 1 UGACUGAGCAUGCCCUCAAUGGGCUUGCACUUGUACGACUCGCUGAUUUGUUGCACUGCGUCGGUGAGGGAGUAGUUCUGCAAAGAUA-------------------UGGA--AUUUA .......(((.((((.....)))).))).....(((..(((((((((..((......)))))))))))...)))(((((.........-------------------.)))--))... ( -27.80) >DroYak_CAF1 7457 99 + 1 UGACUGAGCAUGCCCUCAAUGGGCUUGCACUUGUACGACUCGCUGAUUUGUUGCACUGCAUCGGUGAGGGAGUAGUUCUGUAAAGACA-------------------UUAAGUAUUAA .......(((.((((.....)))).)))((((((((..((((((((..(((......)))))))))))...)))((.((....)))).-------------------.)))))..... ( -30.10) >DroMoj_CAF1 7708 108 + 1 UGACUGAGCAUGCCCUCAAUGGGCUUGCACUUGUACGACUCGCUGAUUUGUUGCACGGCAUCGGUGAUUGAAUAAUUCUAUA---AAU-AGG--UACAAGACA----UGGAUUUGUAA .......(((.((((.....)))).))).(((((((...(((((((..((((....)))))))))))..........(((..---..)-)))--))))))(((----......))).. ( -31.60) >consensus UGACUGAGCAUGCCCUCAAUGGGCUUGCACUUGUACGACUCGCUGAUUUGUUGCACGGCAUCGGUGAGGGAGUAAUUCUGUAAAGAUA_A_A___ACAA_A_A____UGAAGUAUUAA .......(((.((((.....)))).))).....(((...(((((((..(((......))))))))))....)))............................................ (-21.09 = -21.28 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:04 2006