Locus 2084

Sequence ID 3L_DroMel_CAF1
Location 5,730,845 – 5,730,944
Length 99
Max. P 0.679242
window3247

overview

Window 7

Location 5,730,845 – 5,730,944
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 90.81
Mean single sequence MFE -27.23
Consensus MFE -21.64
Energy contribution -23.08
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.79
SVM decision value 0.30
SVM RNA-class probability 0.679242
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5730845 99 + 23771897
GCUAGCCCUGAAGAAUGUCCCGAGCUGUCUACAGAGAUAAACUCUAAAAACACUUCUUCGGAGAGUCCUGUGGCCAAGAAAACGGCCAAGGUCACUUCU
.........(((((((((...(((.(((((....)))))..))).....))).))))))((((.(.(((.(((((........)))))))).).)))). ( -28.50)
>DroSec_CAF1 654 99 + 1
GCUAGCCCUGAAGAAUGCCCCGAGCUGUCUACAGAGAUAAGCUCUAAAAACCCUUCUUCUGAGAGUCCUGUGGCCAAAAAAACGGCCAAGGUCACCUCC
.........((((((......(((((((((....)))).))))).........)))))).(((.(.(((.(((((........)))))))).)..))). ( -27.16)
>DroSim_CAF1 654 99 + 1
GCUAGCCCUGAAGAAUGCCCCGAGCUGUCUACAGAGAUAAGCUCUAAAAACCCUUCUUCUGAGAGUCCUGUGGCCAAAAAAACGGCCAAGGUCACCUCC
.........((((((......(((((((((....)))).))))).........)))))).(((.(.(((.(((((........)))))))).)..))). ( -27.16)
>DroEre_CAF1 656 99 + 1
GCUAGCCCUGAAGAAAGCCCCGAGCUAUCUACAGAGACAAGCUCGAAAAUCACUUCUUCGGAGAGUCCUGUUGCCAAGAAAACGGCCAAGGUCACUUCU
.........((((((.....((((((.(((....)))..))))))........))))))((((.(.(((...(((........)))..))).).)))). ( -26.52)
>DroYak_CAF1 657 99 + 1
GCUAGUCCUGAAGAAAGCCCCGAGCUAUCUACGGAGACAAGCUUAAAAAUCACUUCUUCGGAGAGUCCGGUUGCCAAGAAAACGGCCAAGGUCACUUCU
(((.((((((.(((.(((.....))).))).))).))).))).................((((.(.((....(((........)))...)).).)))). ( -26.80)
>consensus
GCUAGCCCUGAAGAAUGCCCCGAGCUGUCUACAGAGAUAAGCUCUAAAAACACUUCUUCGGAGAGUCCUGUGGCCAAGAAAACGGCCAAGGUCACUUCU
.......((((((((......(((((((((....)))).))))).........))))))))...(.(((.(((((........)))))))).)...... (-21.64 = -23.08 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:00 2006