Locus 2083

Sequence ID 3L_DroMel_CAF1
Location 5,728,961 – 5,729,064
Length 103
Max. P 0.956596
window3246

overview

Window 6

Location 5,728,961 – 5,729,064
Length 103
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 93.90
Mean single sequence MFE -36.38
Consensus MFE -28.24
Energy contribution -28.68
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -2.60
Structure conservation index 0.78
SVM decision value 1.47
SVM RNA-class probability 0.956596
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5728961 103 + 23771897
GGUUUGUGUUUGGACCAUCCAACAUGUGUUUGAACG--CCCAAUUGCAGCGCAUUCACAUCGCACAUCGUGGAUGUGCAUCCUCCAUUCG---GAGGAGACCCAAAAU
((((.(((((..((((((.....))).)))..))))--).........((((((((((..........)))))))))).((((((....)---)))))))))...... ( -38.40)
>DroSec_CAF1 102610 103 + 1
GGUUUGUGUUUGGACCAUCCAACAUGUGUUUGAACG--GCCAACUGCAGCGCAUUCACAUCGCGCACCGUGGAUGUGCAUCCUCCAUUCG---GAGGAGACCCAAAAU
(((((((..((((.((.((.(((....))).))..)--)))))..)))((((((((((..........)))))))))).((((((....)---)))))))))...... ( -37.00)
>DroSim_CAF1 101685 103 + 1
GGUUUGUGUUUGGACCAUCCAACAUGUGUUUGAACG--GCCAACUGCAGCGCAUUCACAUCGCGCACCGUGGAUGUGCAUCCUCCAUUCG---GAGGAGACCCAAAAU
(((((((..((((.((.((.(((....))).))..)--)))))..)))((((((((((..........)))))))))).((((((....)---)))))))))...... ( -37.00)
>DroEre_CAF1 104869 105 + 1
GGUUUGUGUUUGGACCAUCCAACAUGUGUUUGAACGCUGCAAACUGCAGCGCAUUCACAUUGCACAUCGUGAAUGUGCAUCCUCCAUUCG---GUGGAGACCCAAAAU
((((.(((((..((((((.....))).)))..)))))(((.....)))((((((((((..........)))))))))).(((.((....)---).)))))))...... ( -36.80)
>DroYak_CAF1 106433 106 + 1
GGUUUGUGUUUGGACCAUCCAACAUGUGUUUGAACG--GCAAACUGCAGCGCAUUCACAUCGCACAUCGUCGAUGUGCAUCCUCCAUUCGGCGGUGGAGACCCAAAAU
((((((((((..((((((.....))).)))..))).--)))))))................(((((((...)))))))...((((((......))))))......... ( -32.70)
>consensus
GGUUUGUGUUUGGACCAUCCAACAUGUGUUUGAACG__GCCAACUGCAGCGCAUUCACAUCGCACAUCGUGGAUGUGCAUCCUCCAUUCG___GAGGAGACCCAAAAU
((((...(((..((((((.....))).)))..))).............((((((((((..........)))))))))).(((((.........)))))))))...... (-28.24 = -28.68 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:00 2006