| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,726,177 – 5,726,280 |
| Length | 103 |
| Max. P | 0.820809 |
| Location | 5,726,177 – 5,726,280 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 81.55 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -15.53 |
| Energy contribution | -16.20 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5726177 103 + 23771897 AAACGUUUGACUGCGAAUGUCAAUAUCGAUAUGCUAACCGAUAGCUGUCGAUGUUUUAAACACAGUGCACUGUUUUUAAAUCGCUCCCCAUUUAUAUAUAUUU ............((((.....((((((((((.((((.....))))))))))))))(((((.((((....)))).))))).))))................... ( -24.60) >DroSec_CAF1 99874 103 + 1 AAACGUUUGACUGCGAAUGUCAAUAUCGAUAUGCUUAUCGAUAGCUGGCGAUGUUUCAAGCACUGUGCACUGUUAUUAAAUCGCUCAUCGUUUACAUAAAUUU (((((..(((..((((.(((((.((((((((....))))))))..))))).........((.....))............))))))).))))).......... ( -25.00) >DroSim_CAF1 98953 85 + 1 AAACGUUUGACUGCGAAUGUCAAUAUCGAUAUGCUUAUCGAUAGCUGUCGAUGUUUUAAGCACUGUGCACUUUUAUUAAAUCGCU------------------ ............((((.....((((((((((.(((.......)))))))))))))....((.....))............)))).------------------ ( -19.50) >consensus AAACGUUUGACUGCGAAUGUCAAUAUCGAUAUGCUUAUCGAUAGCUGUCGAUGUUUUAAGCACUGUGCACUGUUAUUAAAUCGCUC__C_UUUA_AUA_AUUU ............((((.....((((((((((.(((.......)))))))))))))....((.....))............))))................... (-15.53 = -16.20 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:59 2006