Locus 2081

Sequence ID 3L_DroMel_CAF1
Location 5,717,484 – 5,717,582
Length 98
Max. P 0.533979
window3244

overview

Window 4

Location 5,717,484 – 5,717,582
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 97.75
Mean single sequence MFE -14.02
Consensus MFE -13.51
Energy contribution -14.07
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.12
Structure conservation index 0.96
SVM decision value 0.00
SVM RNA-class probability 0.533979
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5717484 98 - 23771897
AAUGCUUUAUUCGAUUUGCCCGUCGAGUUUGUAUAUGCAUGUAUAUUUGUUUAUAUCUAUAAAAAACCUAUAAAAAUCAUAUAAAAACCAUAUGCAUA
.((((...(((((((......)))))))..))))((((((((.......(((((((......................)))))))....)))))))). ( -16.35)
>DroSec_CAF1 91284 98 - 1
AAUGCUUCAUUCGAUUUGCCCGUCGAGUUUGUAUAUGCAUGUAUAUUUGUUUAUAUCUAUAAAAAACCUAUAAAAAUCAUAUAAAAACCAUAUGCAUA
.((((...(((((((......)))))))..))))((((((((.......(((((((......................)))))))....)))))))). ( -15.65)
>DroSim_CAF1 90395 98 - 1
AAUGCUUCAUUCGAUUUGCCCGUCGAGUUUGUAUAUGCAUGUAUAUUUGUUUAUAUCUAUAAAAAACCUAUAAAAAUCAUAUAAAAACCAUAUGCAUA
.((((...(((((((......)))))))..))))((((((((.......(((((((......................)))))))....)))))))). ( -15.65)
>DroEre_CAF1 93746 97 - 1
AAUGCUUCAUUUGAUUUGCCCGUCGAC-UUGUAUAUGCAUGUAUAUUUGUUUAUAUCUAUAAAAAACCUAUAAAAAUCAUAUAAAAACCAUAUGCAUA
..........(((((......))))).-.((((((((....(((((...((((((.............))))))....))))).....)))))))).. ( -11.22)
>DroYak_CAF1 94806 97 - 1
AAUGCUUCAUUUGAUUUGCCCGUCGAC-UUGUAUAUGCAUGUAUAUUUGUUUAUAUCUAUAAAAAACCUAUAAAAAUCAUAUAAAAACCAUAUGCAUA
..........(((((......))))).-.((((((((....(((((...((((((.............))))))....))))).....)))))))).. ( -11.22)
>consensus
AAUGCUUCAUUCGAUUUGCCCGUCGAGUUUGUAUAUGCAUGUAUAUUUGUUUAUAUCUAUAAAAAACCUAUAAAAAUCAUAUAAAAACCAUAUGCAUA
.((((...(((((((......)))))))..))))((((((((.......(((((((......................)))))))....)))))))). (-13.51 = -14.07 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:58 2006