| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,713,595 – 5,713,694 |
| Length | 99 |
| Max. P | 0.630623 |
| Location | 5,713,595 – 5,713,694 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 82.09 |
| Mean single sequence MFE | -36.98 |
| Consensus MFE | -26.88 |
| Energy contribution | -27.13 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5713595 99 + 23771897 GGGCGAGGAGGACUCGCAGCAGGGCACAAUCAGGCCCAAGGCCACACUGGGUCGAACGCCCAAUCACCUGACGUUGAGGUGAGU--------CCG--GCUAAUCCUCCC (((((((.....)))))(((.((((.......((((...))))....(((((.....))))).((((((.......))))))))--------)).--)))...)).... ( -39.70) >DroVir_CAF1 101768 96 + 1 GGGCGAGGAGGAUUCACAGCAGGGCACAAUCAGGCCCAAGGCUACGCUGGGCCGCACGCCCAAUCACCUGACGCUCAGGUAAGU--------CCC--A--AA-GCUCAC ((((...(.(((((.......((((.......((((((.(....)..))))))....))))....(((((.....))))).)))--------)))--.--..-)))).. ( -37.80) >DroGri_CAF1 92971 96 + 1 GGGCGAAGAAGACUCACAGCAGGGCACAAUCAGGCCCAAGGCCACCCUGGGCCGCACGCCCAAUCACCUGACGCUCAGGUAAGU--------CCC--G--AA-UCUCAC (((((..((....))...((.((((........))))..((((......)))))).)))))....(((((.....)))))....--------...--.--..-...... ( -35.30) >DroMoj_CAF1 105216 96 + 1 GGGCGAGGAGGACUCACAGCAGGGCACAAUCAGGCCCAAGGCUACGCUGGGCCGCACGCCCAAUCACCUGACGCUCAGGUGAGC--------UCC--A--AA-UCUCAG (((((((.....)))...((.((((........))))..((((......))))))..))))..(((((((.....)))))))..--------...--.--..-...... ( -40.00) >DroAna_CAF1 87626 99 + 1 GGGCGAGGAGGACUCGCAGCAGGGCACAAUCAGGCCCAAGGCCACCCUGGGGCGCACGCCCAAUCACCUGACACUGAGGUGAGU--------CCUUUGAUAUUCUUU-- ......(((((((((((..(((..((......((((...))))......((((....)))).......))...)))..))))))--------)))))..........-- ( -37.40) >DroPer_CAF1 94118 104 + 1 GGGGGAGGAGGACUCACAGCAGGGCACAAUCAGACCCAAGGCCACACUGGGCCGCACGCCCAAUCAUCUGACGCUGAGGUAAGUGAAAGGAUCCG--GUAGAUCCC--- .((((((.....)))...((.((((.......).)))..((((......))))))...)))..........((((......))))...(((((..--...))))).--- ( -31.70) >consensus GGGCGAGGAGGACUCACAGCAGGGCACAAUCAGGCCCAAGGCCACACUGGGCCGCACGCCCAAUCACCUGACGCUCAGGUAAGU________CCC__G__AA_CCUCAC (((((((.....)))...((.((((........))))..((((......))))))..))))....((((.......))))............................. (-26.88 = -27.13 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:55 2006