Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,705,565 – 5,705,693 |
Length | 128 |
Max. P | 0.951524 |
Location | 5,705,565 – 5,705,668 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 91.63 |
Mean single sequence MFE | -22.04 |
Consensus MFE | -18.10 |
Energy contribution | -18.50 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.82 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5705565 103 - 23771897 CUUCAGGAGGUCAUCCUCCUGA-------CACCAACCUCCCUCCACCUUCCUCCUCGUGAUCAUACCAACGAUUUUCGGGCACUGCACUUACUUGCUCCGCGGUCUUUAG ..((((((((....))))))))-------.(((.....................(((.((((........))))..)))((...(((......)))...)))))...... ( -23.70) >DroSec_CAF1 79336 100 - 1 CUUCAGGAGGUCAUCCUCCUGC-------CACCAACCUCCCUCCACCUUCCUCC---UGAUCAUACCAACGAUUUUCGGGCACUGCACUUACUUGCUCCGCGGUCUUUAG ...(((((((....))))))).-------.(((...................((---.((((........))))...))((...(((......)))...)))))...... ( -21.30) >DroSim_CAF1 78708 100 - 1 CUUCAGGAGGUCAUCCUCCUGC-------CACCAACCUCCCUCCACCUUCCUCC---UGAUCAUACCAACGAUUUUCGGGCACUGCACUUACUUGCUCCGCGGUCUUUAG ...(((((((....))))))).-------.(((...................((---.((((........))))...))((...(((......)))...)))))...... ( -21.30) >DroEre_CAF1 81580 100 - 1 CUUCAGGAGGUCAUCCUCCAGC-------CGCCAACCUCCCUCCACCUUCCUCC---UGAUCAUAACAACGAUUUUCGGGCACUGCACUUACUUGCUCCGCGGUCUUUAG .....(((((....))))).((-------(((.................(((..---.((((........))))...)))....(((......)))...)))))...... ( -22.30) >DroYak_CAF1 82328 107 - 1 CUUCAGGAGGUCAUCCUCCUGCCUUGUGCCUCCAACCUCCCUCCACCUUCCUCC---AGAUCAUACAAACGUGUUUCGGACGAUGCACUUACUUGCUCCGCGGUCUUUAG ...(((((((....)))))))......(((.....................(((---.((..((((....)))).)))))((..(((......)))..)).)))...... ( -21.60) >consensus CUUCAGGAGGUCAUCCUCCUGC_______CACCAACCUCCCUCCACCUUCCUCC___UGAUCAUACCAACGAUUUUCGGGCACUGCACUUACUUGCUCCGCGGUCUUUAG ...(((((((....))))))).....................................((((.......((.....)).((...(((......)))...))))))..... (-18.10 = -18.50 + 0.40)
Location | 5,705,601 – 5,705,693 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -16.32 |
Consensus MFE | -12.47 |
Energy contribution | -12.80 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.76 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5705601 92 - 23771897 GUUGUCCCCAUUCCAAGUUUUCCAGCUUCAGGAGGUCAUCCUCCUGA-------CACCAACCUCCCUCCACCUUCCUCCUCGUGAUCAUACCAACGAUU ((((...........(((......)))((((((((....))))))))-------...))))..................((((..........)))).. ( -17.90) >DroEre_CAF1 81616 89 - 1 GUUGUCCCCAUUCCCAGUUGUCCAGCUUCAGGAGGUCAUCCUCCAGC-------CGCCAACCUCCCUCCACCUUCCUCC---UGAUCAUAACAACGAUU ................(((((......((((((((............-------....................)))))---))).....))))).... ( -16.95) >DroYak_CAF1 82364 96 - 1 GUUGUCCCCAUUCCCAGUUUUCCAGCUUCAGGAGGUCAUCCUCCUGCCUUGUGCCUCCAACCUCCCUCCACCUUCCUCC---AGAUCAUACAAACGUGU ((((....(((....(((......))).(((((((....)))))))....)))....))))..................---.....((((....)))) ( -14.10) >consensus GUUGUCCCCAUUCCCAGUUUUCCAGCUUCAGGAGGUCAUCCUCCUGC_______CACCAACCUCCCUCCACCUUCCUCC___UGAUCAUACCAACGAUU ((((...........((((....)))).(((((((....)))))))...........))))...................................... (-12.47 = -12.80 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:55 2006