Locus 2077

Sequence ID 3L_DroMel_CAF1
Location 5,701,428 – 5,701,528
Length 100
Max. P 0.903809
window3239

overview

Window 9

Location 5,701,428 – 5,701,528
Length 100
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 74.24
Mean single sequence MFE -16.75
Consensus MFE -11.34
Energy contribution -11.70
Covariance contribution 0.36
Combinations/Pair 1.08
Mean z-score -1.45
Structure conservation index 0.68
SVM decision value 1.03
SVM RNA-class probability 0.903809
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5701428 100 - 23771897
GGCAACGUGUUUGGGUUACGGCUUGUCUCC--CCAAUUUUACCCGUUU-UCCAAACGUUUUUCUU--UCACC-CUGCACCUCUCGUACCC-----CCCACC-CC--UCCCUAAA
(....)..(((((((..((((.........--..........))))..-))))))).........--.....-.................-----......-..--........ ( -14.21)
>DroSec_CAF1 75207 84 - 1
GGCAACGUGUUUGGGUUACGGCUUGUCUCC--CCAAUUUUCCCCGUUU-UCCAAACGUUUUUCUU--UCACC-CC---------------------CCACC-CC--CCGCUACA
(....)..(((((((..((((.........--..........))))..-))))))).........--.....-..---------------------.....-..--........ ( -14.21)
>DroSim_CAF1 74624 83 - 1
GGCAACGUGUUUGGGUUACGGCUUGUCUCC--CCAAUUUUCCCCGUUU-UCCAAACGUUUUUCUU--UCACC-CC---------------------GCACC--C--CCGCUACA
(....)..(((((((..((((.........--..........))))..-))))))).........--.....-..---------------------((...--.--..)).... ( -15.21)
>DroEre_CAF1 77370 103 - 1
GGCAACGUGUUUGGGUUACGGCUUGUCUCC--ACAAUUUUCCCCGCUU-UCCAAACGUUUUUCUU--UCACC-CAGCACCUCUCGCCCCC-----CUCACCACCAACCACUACA
(((.....(((((((...(((.((((....--))))......)))...-)))))))(((......--.....-.))).......)))...-----................... ( -14.00)
>DroYak_CAF1 76423 102 - 1
GGCAACGUGUUUGGGUUACGGCUUGUCUCCCCAAAAUUUUCCCCGUUU-UCCAAACGUUUUUCUU--UCACC-CUGCAUCCCU-GCAUCC-----CUCGUCUUC--CCCCUACA
(((.....(((((((..((((.....................))))..-))))))).........--.....-.((((....)-)))...-----...)))...--........ ( -18.20)
>DroAna_CAF1 75284 101 - 1
GGCAACGUGUUUGGGUUUCGGCUUGUCU---------UUUCCCCUUUUACCCAAACGUUUUUCUGGUCCAGCCCCAUAGUCCU-GCCCCCAGAUCCUUGCC-CC--CUGCUCCG
(((((...((((((((...((.......---------.....))....)))))))).....(((((..(((..(....)..))-)...)))))...)))))-..--........ ( -24.70)
>consensus
GGCAACGUGUUUGGGUUACGGCUUGUCUCC__CCAAUUUUCCCCGUUU_UCCAAACGUUUUUCUU__UCACC_CCGCA_C_CU_GC_CCC_____CUCACC_CC__CCGCUACA
(....)..(((((((..((((.....................))))...))))))).......................................................... (-11.34 = -11.70 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:53 2006