| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,699,863 – 5,699,962 |
| Length | 99 |
| Max. P | 0.694679 |
| Location | 5,699,863 – 5,699,962 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.24 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.45 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.694679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5699863 99 + 23771897 AGAUCGCUUAUUCAUAGUUUGUUGUUAUAUGUA---------CAAGAGUUUCAAUCUAAAAAAUAACAACAUUUUGUGAAUUUAUCCAGAGGUUUCUUUGCUCAGUGC ....((((.((((((((..(((((((((.....---------..(((.......))).....)))))))))..)))))))).....(((((....)))))...)))). ( -20.30) >DroSec_CAF1 72532 105 + 1 AAAUCGCUUAUUCAUAGCUUGUUGUUAUUUGUUA-UACUAUAUAUUAUGUUCAAUCUGA--AAUAACAACAUAUUGUGAAUUUAUCCAGAGGUUUCUUUGCUCAGUGC ....((((.((((((((..((((((((((((((.-.((..........))..)))...)--))))))))))..)))))))).....(((((....)))))...)))). ( -20.60) >DroSim_CAF1 73188 106 + 1 UAAUCGCUUAUUCAUAGUUUGUUGUUAUAUUUAAGGACUCCAUGUUAUGUUCAAUCUAA--AAUAACAACAUAUUGUGAAUUUAUCCAAAGGUUUAUUUGCUCAGUGC ....((((.(((((((((.(((((((((.((((.((((..........))))....)))--)))))))))).))))))))).....((((......))))...)))). ( -20.80) >consensus AAAUCGCUUAUUCAUAGUUUGUUGUUAUAUGUAA__ACU__AUAUUAUGUUCAAUCUAA__AAUAACAACAUAUUGUGAAUUUAUCCAGAGGUUUCUUUGCUCAGUGC ....((((.((((((((..(((((((((..................................)))))))))..)))))))).....(((((....)))))...)))). (-16.33 = -16.45 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:52 2006