Locus 2073

Sequence ID 3L_DroMel_CAF1
Location 5,695,138 – 5,695,239
Length 101
Max. P 0.526763
window3232

overview

Window 2

Location 5,695,138 – 5,695,239
Length 101
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 78.12
Mean single sequence MFE -23.03
Consensus MFE -12.14
Energy contribution -14.20
Covariance contribution 2.06
Combinations/Pair 1.14
Mean z-score -1.76
Structure conservation index 0.53
SVM decision value -0.01
SVM RNA-class probability 0.526763
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5695138 101 - 23771897
U--UCCACCCAAGACACGUUUCCAAAUUCCAUUUGCACGGCUCCACAUGCAAUUUCCAAGUUAAAUUCGAUAAGUUGAAUUGAACUUGAAGUUGGC-------GCGCCAU
.--.............(((..((((.......(((((.(......).)))))....((((((.(((((((....))))))).))))))...)))).-------))).... ( -20.60)
>DroSec_CAF1 67721 101 - 1
U--UUCACCCAGGACACGUUUCAAAAUUCCAUUUGCACGGCUCCACAUGCAAUUUCCAAGUUAAAUUCGAUAAGUUGAAUUGAACUUGGAGUUGGC-------GCGCCAU
.--........(((..(((..((((......)))).)))..)))....((...(((((((((.(((((((....))))))).)))))))))...))-------....... ( -27.20)
>DroSim_CAF1 68044 101 - 1
U--UUCACCCAGGACACGUUUCAAAAUUCCAUUUGCACGGCUCCACAUGCAAUUUCCAAGUUAAAUUCGAUAAGUUGAAUUGAACUUGGAGUUGGC-------GCGCCAU
.--........(((..(((..((((......)))).)))..)))....((...(((((((((.(((((((....))))))).)))))))))...))-------....... ( -27.20)
>DroEre_CAF1 71040 103 - 1
U--UCCACCCUAGCCACGUUUCCAAAUUCCAUUUGCACGGCUCCACAUGCAAUUUCCAAGUUAAAUUCGAUAAGUUGAAUUGAACUUGGAGUUGGAUG-----GGGCCAU
.--...................................(((.((.(((.(((((.(((((((.(((((((....))))))).)))))))))))).)))-----))))).. ( -31.60)
>DroYak_CAF1 70139 82 - 1
A--UCCAUCCCAGACACGUUUCCAAAUUCCAUUUGCACGGCUCCACAUGCAAUUUCCAAGUUAAAUUCGAUAAGUUGAAUUGAA--------------------------
.--.............................(((((.(......).)))))...........(((((((....)))))))...-------------------------- (  -8.20)
>DroAna_CAF1 69570 98 - 1
UGCUUCACCU----CACGUG-CCAAAUUCCAAAU-------UCUACAUGCAAUUUUCAACUUGGAUGCAAUAAGUUGAAUUGAACUUGAAGUUUCUGGGGGGCACACCAC
..........----...(((-((....((((.(.-------.((.((..((((..((((((((.......))))))))))))....)).))..).)))).)))))..... ( -23.40)
>consensus
U__UCCACCCAAGACACGUUUCCAAAUUCCAUUUGCACGGCUCCACAUGCAAUUUCCAAGUUAAAUUCGAUAAGUUGAAUUGAACUUGGAGUUGGC_______GCGCCAU
................................(((((.(......).))))).(((((((((.(((((((....))))))).)))))))))................... (-12.14 = -14.20 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:46 2006