| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,694,982 – 5,695,081 |
| Length | 99 |
| Max. P | 0.646677 |
| Location | 5,694,982 – 5,695,081 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.29 |
| Mean single sequence MFE | -21.94 |
| Consensus MFE | -17.20 |
| Energy contribution | -16.82 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.646677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5694982 99 + 23771897 AAGAAGCGACGUGACAUGGAGGAUCACAAUUACUUUGUGCCGCAUCGCAACGAUCUGAUUGAAAAUUAUGUAAGUA-CA--------UAAUCAAAGCCAGAA----UGUGAA-------- .....((((.(((.((..(((...........)))..)).))).)))).(((.((((.((((...((((((....)-))--------)))))))...)))).----)))...-------- ( -25.60) >DroVir_CAF1 83512 94 + 1 AAGAAGCGACGUGACAUGGAGGAUCACAAUUACUUUGUGCCACAUCGCAAUGAUCUGAUUGAAAAUUAUGUAAGUAACC--------UAU-----ACCAGAA----GCCCG--------- .....((((.(((.((..(((...........)))..)).))).)))).....((((........((((....))))..--------...-----..)))).----.....--------- ( -18.56) >DroGri_CAF1 73321 98 + 1 AAGAAGCGACGUGACAUGGAGGAUCACAAUUACUUUGUGCCACAUCGCAAUGAUCUGAUUGAAAAUUAUGUAAGUUACC--------UAC-----ACCAAGUAACUGCCCC--------- .....((((.(((.((..(((...........)))..)).))).))))........................((((((.--------...-----.....)))))).....--------- ( -20.50) >DroWil_CAF1 86299 99 + 1 AAGAAGCGACGCGACAUGGAGGAUCAUAAUUACUUUGUGCCGCAUCGCAAUGAUCUAAUUGAAAACUAUGUAAGUA-CA--------AAAGCAGCAGCUAAU----UGGGAA-------- .....((((.(((.((..(((...........)))..)).))).)))).....(((((((........(((....)-))--------..(((....))))))----))))..-------- ( -23.80) >DroMoj_CAF1 83709 94 + 1 AAGAAGCGACGUGACAUGGAGGAUCACAAUUACUUUGUGCCACAUCGCAAUGAUCUGAUUGAAAAUUAUGUAAGUAACC--------UAC-----ACCAAGA----GCCCC--------- .....((((.(((.((..(((...........)))..)).))).)))).....(((...((....((((....))))..--------..)-----)...)))----.....--------- ( -17.40) >DroPer_CAF1 72984 115 + 1 AAGAAGCGACGUGACAUGGAGGAUCACAAUUACUUUGUGCCGCAUCGCAACGAUCUGAUUGAAAAUUAUGUAAGUA-CACAUACGUAUAAUCAAAGCCAGAA----UGCCAGGAAUGCCA .....((((.(((.((..(((...........)))..)).))).)))).....((((.((((....((((((.(..-..).))))))...))))...)))).----.....((....)). ( -25.80) >consensus AAGAAGCGACGUGACAUGGAGGAUCACAAUUACUUUGUGCCACAUCGCAAUGAUCUGAUUGAAAAUUAUGUAAGUA_CA________UAA_____ACCAAAA____GCCCA_________ .....((((.(((.((..(((...........)))..)).))).))))........................................................................ (-17.20 = -16.82 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:45 2006