| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,689,454 – 5,689,557 |
| Length | 103 |
| Max. P | 0.554494 |
| Location | 5,689,454 – 5,689,557 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.33 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -13.97 |
| Energy contribution | -14.17 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5689454 103 - 23771897 CGGUGCUGCAACCA-GAAUU---CAGCAUUUGAAAUCCCCACUUUGGAUCCCACUUUCACGUGCAUUUAUAGCACGCUUGCAUAGAUCUCACGGAGCACGUGAUUGU .(((((((.((...-...))---))))))).(..((((.......))))..)((..((((((((.(((((.(((....))))))))((.....))))))))))..)) ( -26.00) >DroVir_CAF1 76314 103 - 1 GCCCAAUCCAACCA-CCCUUCGUUAGCAUUGCCAGUGCC--AUUGCAAUCCCACUUUCACGUGCAUUUAUA-CACGCUUCCAUAGAUUUCAUGGAGCACGUGAUUGU ..............-..........(((..((....)).--..)))......((..((((((((.......-......(((((.(....))))))))))))))..)) ( -20.41) >DroGri_CAF1 66701 91 - 1 ACCCUCUCAGUCC-------------CGCUCCCAAUGGC--AUUGCAAUCCCACUUUCACGUGCAUUUAUA-CACGCUUGCAUAGAUUUCAUGGAGCACGUGAUUGU .......((((.(-------------((.......))).--)))).......((..((((((((.(((((.-....((.....)).....)))))))))))))..)) ( -18.50) >DroYak_CAF1 64191 103 - 1 CGGUGGUGCAACCA-GAAUU---CAGCAUUUGAAAUCCCCACUUUGGAUCCCACUUUCACGUGCAUUUAUAGCACGCUUGCAUAGAUCUCAUGGAGCACGUGAUUGU .((.(((.(((...-((.((---(((...))))).))......))).)))))((..((((((((.(((((.(((....))))))))((.....))))))))))..)) ( -25.90) >DroMoj_CAF1 76162 92 - 1 ACCCUAUCCGACCAACCGUUCGUUAGCAU--------------UGCAAUCCCACUUUCACGUGCAUUUAUA-CACGCUUCCAUAGAUUUCAUGGAGCACGUGAUUGU ...(((..(((.(....).))).)))...--------------.........((..((((((((.......-......(((((.(....))))))))))))))..)) ( -17.91) >DroAna_CAF1 63124 103 - 1 CAGUCACCAAUCCA-GAAUUC--CAGCAUUUGAAAUC-CCACUUUGGAUUCCACUUUCAUGUGCAUUUAUAGCACGGUUGCAUAGAUCUCAUGGAGCACGUGAUUGU (((((((...((((-((..((--..(((..((.((((-(......))))).))......(((((.......)))))..)))...))..)).))))....))))))). ( -27.00) >consensus CCCCGAUCCAACCA_GAAUU___CAGCAUUUGAAAUCCC__CUUGCAAUCCCACUUUCACGUGCAUUUAUA_CACGCUUGCAUAGAUCUCAUGGAGCACGUGAUUGU ....................................................((..((((((((.(((((......((.....)).....)))))))))))))..)) (-13.97 = -14.17 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:43 2006