Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 572,298 – 572,388 |
Length | 90 |
Max. P | 0.560584 |
Location | 572,298 – 572,388 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.74 |
Mean single sequence MFE | -27.77 |
Consensus MFE | -17.03 |
Energy contribution | -17.03 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.16 |
Mean z-score | -1.31 |
Structure conservation index | 0.61 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 572298 90 + 23771897 GCCG---------CUCAUUUGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGAUUUU------CGAUCU----UGUUUCGGUUCCUGGGCAGA------UAGUUA-----UGCA ...(---------(......))......(((...(((((.(((((....((((((((((((..------.)))).----))))).)))...))))).))------)))...-----))). ( -27.30) >DroPse_CAF1 3072 120 + 1 GUCAGUCUUUUGACUGUUUUGCAUUCACGCGAAUCUUUUGGCCCAAUUUGCCAAACAGAUUUUUGUCUUCGAUUUGGGGUGUCUCUGUUUCCUGGCGAAAAAUUAUAGUUAUGUUAUGCA ..(((((....)))))...(((((..(((..(.(((((((((.......)))))).)))((((((((...((..(((((...)))))..))..)))))))).......)..))).))))) ( -28.30) >DroSec_CAF1 3722 90 + 1 GCCG---------CUCAUUUGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGCUUUU------CGAUCU----UGUUUCGGUUCCUGGGCAGA------UAGUUA-----UGCA ...(---------(......))......(((...(((((.(((((....(((((((((.....------.....)----))))).)))...))))).))------)))...-----))). ( -24.70) >DroSim_CAF1 4148 90 + 1 GCCG---------CUCAUUUGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGAUUUU------CGAUCU----UGUUUCGGUUCCUGGGCAGA------UAGUUA-----UGCA ...(---------(......))......(((...(((((.(((((....((((((((((((..------.)))).----))))).)))...))))).))------)))...-----))). ( -27.30) >DroEre_CAF1 3748 90 + 1 GCCG---------CUCACUCGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGAUUUU------CGAUUU----GGUUGCGGUUCCUGGGCAGA------AAGCUA-----UGCA ...(---------((((.(((((..((((.((((((((((((.......))).))))))))).------))...)----)..)))))....)))))...------......-----.... ( -30.50) >DroPer_CAF1 3087 120 + 1 GCCAGUCUUUUGACUGUUUUGCAUUCACGCGAAUCUUUUGGCCCAAUUUGCCAAACAGAUUUUUGUCUUCGAUUUGGGGUGUCUCUGUUUCCUGGCGAAAAAUUAUAGUUAUGUUAUGCA ..(((((....)))))...(((((..(((..(.(((((((((.......)))))).)))((((((((...((..(((((...)))))..))..)))))))).......)..))).))))) ( -28.50) >consensus GCCG_________CUCAUUUGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGAUUUU______CGAUCU____UGUUUCGGUUCCUGGGCAGA______UAGUUA_____UGCA (((.................((......))((((((((((((.......))).)))))))))...............................)))...........((........)). (-17.03 = -17.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:05 2006