Locus 2067

Sequence ID 3L_DroMel_CAF1
Location 5,687,174 – 5,687,272
Length 98
Max. P 0.603368
window3222

overview

Window 2

Location 5,687,174 – 5,687,272
Length 98
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 78.27
Mean single sequence MFE -19.76
Consensus MFE -4.12
Energy contribution -4.76
Covariance contribution 0.64
Combinations/Pair 1.25
Mean z-score -1.80
Structure conservation index 0.21
SVM decision value 0.14
SVM RNA-class probability 0.603368
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5687174 98 + 23771897
UUCAAUGCGUCAAAAAUAAUUAUUUCCCUGGAGUACUUUAAAUUUGAACGAUGAGCUAGAAAUAAAAAUGUCAAUCAGAUUAAUGUCAU-----------GAUGACAUU
((((...(((((((..(((....(((....)))....)))..)))).))).))))...........(((((((.((((((....))).)-----------))))))))) ( -17.00)
>DroSec_CAF1 59801 97 + 1
UUCAAUGCGUCAAAAAUAAUUAUUCCC-UGGAGUACUUUAAAUUUGAGCGAUGAGCAAGAAAUAUAAAUGUCAAUCAGAUUAAUGUCAU-----------GAUGACAUU
((((.(((.(((((..(((.(((((..-..)))))..)))..)))))))).))))...........(((((((.((((((....))).)-----------))))))))) ( -22.10)
>DroSim_CAF1 60056 98 + 1
UUCAAUGCGUCAAAAAUAAUUACUCCCUUGGAGUACUUUAAAUUUGAGCGAUGAGCAAGAAAUAUAAAUGUCAAUCAGAUUAAUGUCAU-----------GAUGACAUU
((((.(((.(((((..(((.((((((...))))))..)))..)))))))).))))...........(((((((.((((((....))).)-----------))))))))) ( -24.70)
>DroEre_CAF1 63254 103 + 1
---GAUGUGUCAAAAAUAAUU---UCCUUGGAGUAUUUUAAAUUGCAGCGAUGAGGGAAAAAUAUAAAUGUCAAUCAGAUAAAUGUCAUGUGCGUUAUUUGAUGAUAUU
---................((---((((((..((.............))..)))))))).......(((((((.((((((((.(((.....)))))))))))))))))) ( -18.72)
>DroYak_CAF1 61833 95 + 1
GACAAUGUGUCAAAAAUAAUU---UCCUUAGAGUAUUUUAAAUUU-----------GAGAAAUAUAAAUGUCAAUCAGAUUAAUGUCAUGUGCAUUAUUUGAUGAUACG
......(((((.......(((---((.(((((..........)))-----------)))))))..........(((((((.(((((.....))))))))))))))))). ( -16.30)
>consensus
UUCAAUGCGUCAAAAAUAAUUA_UUCCUUGGAGUACUUUAAAUUUGAGCGAUGAGCAAGAAAUAUAAAUGUCAAUCAGAUUAAUGUCAU___________GAUGACAUU
........((((........(((((.....)))))..........................................(((....)))...............))))... ( -4.12 =  -4.76 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:36 2006