Locus 2065

Sequence ID 3L_DroMel_CAF1
Location 5,682,377 – 5,682,492
Length 115
Max. P 0.864046
window3218

overview

Window 8

Location 5,682,377 – 5,682,492
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 90.43
Mean single sequence MFE -28.47
Consensus MFE -21.72
Energy contribution -21.68
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -2.04
Structure conservation index 0.76
SVM decision value 0.84
SVM RNA-class probability 0.864046
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5682377 115 - 23771897
UGCCGGCUAUUAAUUAUGAGCGCUGAGCAAACUUCUGCGAGUCACUUCUUAUAGUAAUUUGAGAAACUUUCUUUUUGUUGGAUUUCCCAUAACCGGAAGUUGUAAUUUUCCGGCA
.(((((.....((((((..((.....)).((((((((.((((...((((((........)))))))))).....((((.((....)).)))).))))))))))))))..))))). ( -29.00)
>DroSec_CAF1 54940 115 - 1
UGCCGGCUAUUAAUUAUGAGCGCUGAGCAAACUUCUGCGAGUCACUUCUUAUAGUAAUUUGAAAAACUUUCUUUUUGUUGGAUUUCCCAUAACCGGAAGUUGUAAUUUUCCGGCA
.(((((.....((((((..((.....)).(((((((((((((.(((......))).))))).............((((.((....)).)))).))))))))))))))..))))). ( -28.50)
>DroSim_CAF1 57739 102 - 1
UGCCGGCUAUUAAUUAUGAGCG-----CAAACUU--------CACUUCUUAUAGUAAUUUGAAAAACUUUCUUUUUGUUGGAUUUCCCAUAACCGGAAGUUGUAAUUUUCCGGCA
.(((((..((((((((((((..-----.......--------.....)))))))).........(((((((...((((.((....)).))))..))))))).))))...))))). ( -22.34)
>DroEre_CAF1 58381 112 - 1
UGCCGGCUAUUAAUUACGAGCGCUGAGCAAACUUCUACGAGUCUCU---CAUAGUAAUUUGAAAAACUUUCUUUUUGUUGGAUUUCCCAUAACCGGAAGUUGUAAUUUUCCGGCA
.(((((.....((((((..((..((((...((((....))))..))---))..)).........(((((((...((((.((....)).))))..)))))))))))))..))))). ( -27.30)
>DroYak_CAF1 56526 115 - 1
UGCCGGCUAUUAAUUACGAGCACUGAGCAAACUUCUACGGGUCUCUGCUUACUGUAAUUUGAAAAACUUUCGUUUUGUUGGAUUUCCCAUAACCGGAAGUUGUAAUUUUCCGGCA
.(((((.....((((((..(((.((((((....((....))....)))))).))).........((((((((..((((.((....)).)))).))))))))))))))..))))). ( -35.20)
>consensus
UGCCGGCUAUUAAUUAUGAGCGCUGAGCAAACUUCUACGAGUCACUUCUUAUAGUAAUUUGAAAAACUUUCUUUUUGUUGGAUUUCCCAUAACCGGAAGUUGUAAUUUUCCGGCA
.(((((.....((((((..((.....))....................................(((((((...((((.((....)).))))..)))))))))))))..))))). (-21.72 = -21.68 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:33 2006