Locus 2064

Sequence ID	3L_DroMel_CAF1
Location	5,680,693 – 5,680,783
Length	90
Max. P	0.774490

overview

Window 7

Location	5,680,693 – 5,680,783
Length	90
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	89.77
Mean single sequence MFE	-25.02
Consensus MFE	-19.48
Energy contribution	-19.96
Covariance contribution	0.48
Combinations/Pair	1.11
Mean z-score	-1.74
Structure conservation index	0.78
SVM decision value	0.54
SVM RNA-class probability	0.774490
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5680693 90 + 23771897
UGGAGAAUGCCAGGAUGAAAUCCAAGG--AGCACAGGCU-UGGAUUGCGGUUGCAUUUCGCAUUUCACAUUUUGCAUUUUGCGUUUUGCAUUU
.(.(((((((.((((((.((((((((.--........))-))))))((((.......))))......))))))))))))).)........... ( -25.50)
>DroSec_CAF1 53285 83 + 1
UGGAGAAUGCCAGGAUGAAAUCCAAGG--AGCACGGGCU-UGGAUUUCGGUUGCAUUUCGCA-------UUUUGCAUUUUGCGUUUUGCAUUU
..((((.(((.....(((((((((((.--........))-)))))))))...)))))))(((-------...(((.....)))...))).... ( -24.90)
>DroSim_CAF1 56082 83 + 1
UGGAGAAUGCCAGGAUGAAAUCCAAGG--AGCACGGGCU-UGGAUUGCGGUUGCAUUUCGCA-------UUUUGCAUUUUGCGUUUUGCAUUU
((.(((((((.((((((.((((((((.--........))-))))))((((.......)))).-------.....))))))))))))).))... ( -25.30)
>DroEre_CAF1 56745 84 + 1
UGGAGAAUUCCAGGAUGAAAUCCAAGG--UGCAUGGGCUUUGGAUUGCGGUUGCAUUUCGCA-------UUUCGCAUUUCGCAUUUUGCAUUU
..........(((((((.(((((((((--(......))))))))))((((.(((.....)))-------..))))......)))))))..... ( -24.10)
>DroYak_CAF1 54841 85 + 1
UGGAGAAUUCCAGGAUGAAAUCCAAGGAAGGCAUGGGCU-UGGAUUGCGGUUGCAAUUCGCA-------UUUUGCGUUUUGCAUUUUGCAUUU
(((......)))......((((((((...........))-))))))((((.(((((..(((.-------....)))..)))))..)))).... ( -25.30)
>consensus
UGGAGAAUGCCAGGAUGAAAUCCAAGG__AGCACGGGCU_UGGAUUGCGGUUGCAUUUCGCA_______UUUUGCAUUUUGCGUUUUGCAUUU
((.(((((((.((((((.((((((.....(((....))).))))))((((.......)))).............))))))))))))).))... (-19.48 = -19.96 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:32 2006