Locus 2060

Sequence ID 3L_DroMel_CAF1
Location 5,669,509 – 5,669,601
Length 92
Max. P 0.517118
window3212

overview

Window 2

Location 5,669,509 – 5,669,601
Length 92
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 88.53
Mean single sequence MFE -21.96
Consensus MFE -14.78
Energy contribution -15.90
Covariance contribution 1.12
Combinations/Pair 1.10
Mean z-score -2.01
Structure conservation index 0.67
SVM decision value -0.03
SVM RNA-class probability 0.517118
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5669509 92 + 23771897
AUCAAAUGAAUAAUAAUCAGCACUAAAUAGUUGAGGCCAGU-GGAAAGUGAAAAAGUGGCAAGUGCAAAA---GUGCACAC--------ACACACAAAUGGCGG
................(((((........))))).((((((-(.....(....).(((....(((((...---.))))).)--------)).)))...)))).. ( -18.70)
>DroSec_CAF1 42159 97 + 1
AUCAAAUGAAUAAUAAUCAGCACUAAAUAGUUGAGGCCAGU-GGAAAGUGGAAAAGUGGCAAGUGCAA-A---GUGCACACACACAC--ACACACAAAUGGCGG
................(((((........))))).((((((-(....(((.....(((....((((..-.---..)))).)))...)--)).)))...)))).. ( -21.10)
>DroSim_CAF1 43222 97 + 1
AUCAAAUGAAUAAUAAUCAGCACUAAAUAGUUGAGGCCAGU-GGAAAGUGGAAAAGUGGCAAGUGCAA-A---GUGCACACACGCAC--ACACACAAAUGGCGG
................(((((........))))).((((((-(....(((.....(((....((((..-.---..)))).)))...)--)).)))...)))).. ( -22.20)
>DroEre_CAF1 45465 97 + 1
AUCAAAUGAAUAAUAAUCAGCACUAAAUAGUUGAGGCCAGU-GGAAAGUGCC-CAGUGGCA-GUGCAA-A---GUGCACACACACACACAAACAAAAAUGGCGG
................(((((........))))).((((.(-((.......)-)).)))).-((((..-.---..))))......................... ( -21.80)
>DroYak_CAF1 43068 102 + 1
AUCAAAUGAAUAAUAAUCAGCACUAAAUAGUUGAGGCCAGUUGGAAAGUGGC-AAGUGGCAAGUGCAC-ACACGCACGCACCCACACACAAACACAAAUGGCGG
................(((((........))))).((((.(((....(((..-..((((...((((..-....))))....)))).))).....))).)))).. ( -26.00)
>consensus
AUCAAAUGAAUAAUAAUCAGCACUAAAUAGUUGAGGCCAGU_GGAAAGUGGAAAAGUGGCAAGUGCAA_A___GUGCACACACACAC__ACACACAAAUGGCGG
................(((((........))))).((((........(((.....(((....(((((.......)))))...))).....))).....)))).. (-14.78 = -15.90 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:27 2006