| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 571,911 – 572,009 |
| Length | 98 |
| Max. P | 0.993799 |
| Location | 571,911 – 572,009 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 94.06 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -24.64 |
| Energy contribution | -25.53 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.44 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.982844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 571911 98 + 23771897 GCUUCACCUGUAAAUCACGGCGGUUAAUUAUCCCCGAACCGCCGCAUUAAUCAGGUUCAUAUGUAUGCAC-UGUA--UGAUCUGUUGUUUAUCCGCUUUAU ((...(((((.......((((((((...........)))))))).......)))))((((((((....))-.)))--)))..............))..... ( -23.94) >DroSec_CAF1 3344 101 + 1 GCUUCACCUGUAAAUCACGGCGGUUAAUUAUCCCCAAACCGCCGCAUUAAUCAGGUUCAUAUAUGUAUAUAUGUACCUGAUCUGUUGUUUAUCCGCUUUAU .........((((((.(((((((((...........)))))))......(((((((.((((((....)))))).)))))))..)).))))))......... ( -28.30) >DroSim_CAF1 3769 101 + 1 GCUUCACCUGUAAAUCACGGCGGUUAAUUAUCCCCAAACCGCCGCAUUAAUCAGGUUCAUAUAUGUAUAUAUGUACCUGAUCUGUUGUUUAUCCGCUUUAU .........((((((.(((((((((...........)))))))......(((((((.((((((....)))))).)))))))..)).))))))......... ( -28.30) >consensus GCUUCACCUGUAAAUCACGGCGGUUAAUUAUCCCCAAACCGCCGCAUUAAUCAGGUUCAUAUAUGUAUAUAUGUACCUGAUCUGUUGUUUAUCCGCUUUAU .........((((((.(((((((((...........)))))))......(((((((.((((((....)))))).)))))))..)).))))))......... (-24.64 = -25.53 + 0.89)
| Location | 571,911 – 572,009 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 94.06 |
| Mean single sequence MFE | -28.87 |
| Consensus MFE | -28.40 |
| Energy contribution | -28.73 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.02 |
| Structure conservation index | 0.98 |
| SVM decision value | 2.43 |
| SVM RNA-class probability | 0.993799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 571911 98 - 23771897 AUAAAGCGGAUAAACAACAGAUCA--UACA-GUGCAUACAUAUGAACCUGAUUAAUGCGGCGGUUCGGGGAUAAUUAACCGCCGUGAUUUACAGGUGAAGC .....((..............(((--((..-((....)).)))))(((((...((((((((((((...........))))))))).)))..)))))...)) ( -23.20) >DroSec_CAF1 3344 101 - 1 AUAAAGCGGAUAAACAACAGAUCAGGUACAUAUAUACAUAUAUGAACCUGAUUAAUGCGGCGGUUUGGGGAUAAUUAACCGCCGUGAUUUACAGGUGAAGC .....(..(((........((((((((.((((((....)))))).))))))))...(((((((((...........))))))))).)))..)......... ( -31.70) >DroSim_CAF1 3769 101 - 1 AUAAAGCGGAUAAACAACAGAUCAGGUACAUAUAUACAUAUAUGAACCUGAUUAAUGCGGCGGUUUGGGGAUAAUUAACCGCCGUGAUUUACAGGUGAAGC .....(..(((........((((((((.((((((....)))))).))))))))...(((((((((...........))))))))).)))..)......... ( -31.70) >consensus AUAAAGCGGAUAAACAACAGAUCAGGUACAUAUAUACAUAUAUGAACCUGAUUAAUGCGGCGGUUUGGGGAUAAUUAACCGCCGUGAUUUACAGGUGAAGC .....(..(((........((((((((.((((((....)))))).))))))))...(((((((((...........))))))))).)))..)......... (-28.40 = -28.73 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:00 2006