| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,666,548 – 5,666,646 |
| Length | 98 |
| Max. P | 0.996962 |
| Location | 5,666,548 – 5,666,646 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 96.94 |
| Mean single sequence MFE | -19.32 |
| Consensus MFE | -16.86 |
| Energy contribution | -16.46 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.87 |
| SVM decision value | 2.78 |
| SVM RNA-class probability | 0.996962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5666548 98 + 23771897 UACAUUGCCCAGAUAUUUUUAGCACGCGGGCGAAAAUUUAAAUCGCCAUCGAACGGCAAAAGAAUAAAAACACAAAUGCUGAGGCAAAAAAGAAAAAC ....((((((((.(((((((.((...(((((((.........)))))..))....))..)))))))....((....))))).)))))........... ( -19.60) >DroSec_CAF1 39194 98 + 1 UACAUUGCCCAGAUAUUUUUAGCACGCGGGCGAAAAUUUAAAUCGCCAUCGAACGGCAAAAGAAUAAAAACACAAAUGCUGAGGCAAAAAAGAAAAAC ....((((((((.(((((((.((...(((((((.........)))))..))....))..)))))))....((....))))).)))))........... ( -19.60) >DroSim_CAF1 40255 98 + 1 UACAUUGCCCAGAUAUUUUUAGCACGCGGGCGAAAAUUUAAAUCGCCAUCGAACGGCAAAAGAAUAAAAACACAAAUGCUGAGGCGAAAAAGAAAAAC ....((((((((.(((((((.((...(((((((.........)))))..))....))..)))))))....((....))))).)))))........... ( -19.30) >DroEre_CAF1 42508 98 + 1 UACAUUGCCCAGAUAUUUUUAGCACGCGGGCGAAAAUUUAAAUCGCCAUCGAACAGAAAAAGAAUAAAAACUCGAAUGCUAAGGCAAAAAAGAAAAAC ....(((((.........((((((..(((((((.........))))).((.....))...............))..)))))))))))........... ( -20.20) >DroYak_CAF1 40066 98 + 1 UACAUUGCCCAGAUAUUUUUAGCACGCGGGCGAAAAUUUAAAUCGCCAUCGAACGGAAAAAGAAUAAAAACUCAAAUGCUAAGGCAAAAAAGAAAAAC ....(((((.........((((((((..(((((.........)))))..))..........((........))...)))))))))))........... ( -17.90) >consensus UACAUUGCCCAGAUAUUUUUAGCACGCGGGCGAAAAUUUAAAUCGCCAUCGAACGGCAAAAGAAUAAAAACACAAAUGCUGAGGCAAAAAAGAAAAAC ....(((((.........((((((((..(((((.........)))))..))..(.......)..............)))))))))))........... (-16.86 = -16.46 + -0.40)
| Location | 5,666,548 – 5,666,646 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 96.94 |
| Mean single sequence MFE | -21.21 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.02 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5666548 98 - 23771897 GUUUUUCUUUUUUGCCUCAGCAUUUGUGUUUUUAUUCUUUUGCCGUUCGAUGGCGAUUUAAAUUUUCGCCCGCGUGCUAAAAAUAUCUGGGCAAUGUA ...........(((((.(((.....(((((((((.......(((((.....(((((.........))))).))).))))))))))))))))))).... ( -22.11) >DroSec_CAF1 39194 98 - 1 GUUUUUCUUUUUUGCCUCAGCAUUUGUGUUUUUAUUCUUUUGCCGUUCGAUGGCGAUUUAAAUUUUCGCCCGCGUGCUAAAAAUAUCUGGGCAAUGUA ...........(((((.(((.....(((((((((.......(((((.....(((((.........))))).))).))))))))))))))))))).... ( -22.11) >DroSim_CAF1 40255 98 - 1 GUUUUUCUUUUUCGCCUCAGCAUUUGUGUUUUUAUUCUUUUGCCGUUCGAUGGCGAUUUAAAUUUUCGCCCGCGUGCUAAAAAUAUCUGGGCAAUGUA .............(((.(((.....(((((((((.......(((((.....(((((.........))))).))).)))))))))))))))))...... ( -20.81) >DroEre_CAF1 42508 98 - 1 GUUUUUCUUUUUUGCCUUAGCAUUCGAGUUUUUAUUCUUUUUCUGUUCGAUGGCGAUUUAAAUUUUCGCCCGCGUGCUAAAAAUAUCUGGGCAAUGUA ...........((((((((((((.(((((....))))..............(((((.........))))).).)))))).........)))))).... ( -21.00) >DroYak_CAF1 40066 98 - 1 GUUUUUCUUUUUUGCCUUAGCAUUUGAGUUUUUAUUCUUUUUCCGUUCGAUGGCGAUUUAAAUUUUCGCCCGCGUGCUAAAAAUAUCUGGGCAAUGUA ...........(((((((((((...((((....))))..........((..(((((.........)))))..))))))).........)))))).... ( -20.00) >consensus GUUUUUCUUUUUUGCCUCAGCAUUUGUGUUUUUAUUCUUUUGCCGUUCGAUGGCGAUUUAAAUUUUCGCCCGCGUGCUAAAAAUAUCUGGGCAAUGUA ...........(((((.(((.....(((((((((..........((.((..(((((.........)))))..)).))))))))))))))))))).... (-18.66 = -19.02 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:26 2006