Locus 2058

Sequence ID 3L_DroMel_CAF1
Location 5,665,736 – 5,665,829
Length 93
Max. P 0.951115
window3209

overview

Window 9

Location 5,665,736 – 5,665,829
Length 93
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 75.19
Mean single sequence MFE -29.63
Consensus MFE -11.35
Energy contribution -11.35
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.38
SVM decision value 1.41
SVM RNA-class probability 0.951115
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5665736 93 + 23771897
GCAGUGAAACUGAAACUGAAGCUCAAGCUCAAGC------------------UGAAG------CUAUAUUCCUGAUGCCUCAGCGGGAGGCGGGCGGCAAAAAAGAAAUCAAAUUAC
.((((.........)))).((((..(((....))------------------)..))------))......(((.((((((.....))))))..))).................... ( -22.50)
>DroPse_CAF1 38785 110 + 1
GAAUUGAAGCUGAAGCUGAAGCUGAGGCUGAGGCUGAGGCUAAGGCUGAUGUUGAAG------CUGUGUGGCUGAUGCCUCAGCAGGAGGCGGGCGGCAAA-AAGAAAUCAAAUUAC
...((((..((...((((..(((...((((((((...(((((.((((........))------))...)))))...))))))))....)))...))))...-.))...))))..... ( -43.00)
>DroEre_CAF1 41690 93 + 1
GCAGUGAAACUGAAACUGAAGCUCAAGCUCAAGC------------------UGAAG------CUAUAUUCCUGAUGCCUCAGCGGGAGGCGGGCGGCAAAAAAGAAAUCAAAUUAC
.((((.........)))).((((..(((....))------------------)..))------))......(((.((((((.....))))))..))).................... ( -22.50)
>DroYak_CAF1 39219 99 + 1
GCAGUGAAACUGAAACUGAAGCUCAAGCUCAAGC------------------UGAAGCUGUAGCUAUAUUCCUGAUGCCUCAGCGGGAGGCGGGCGGCAAAAAAGAAAUCAAAUUAC
.(((.....)))....((..((((.((((..(((------------------....)))..))))...........(((((.....)))))))))..)).................. ( -25.20)
>DroAna_CAF1 39443 86 + 1
GAAGUGAAAUUGAAGCUGUGA--GGAGCUAU-----------------------GGG------CUCUGAUGCUGAUGCCUCAGCAGGAGGCGGGCGGCAAAAAAGAAAUCAAAUUAC
...((((..((((..((....--(((((...-----------------------..)------))))..(((((.((((((.....))))))..)))))....))...)))).)))) ( -25.80)
>DroPer_CAF1 38990 104 + 1
GAAUUGAAGCUGAAGCUGAAGCUGAGG------CUGAGGCUAAGGCUGAUGUUGAAG------CUGUAUGGCUGAUGCCUCAGCAGGAGGCGGGCGGCAAA-AAGAAAUCAAAUUAC
........((((..(((...(((((((------(...(((((.((((........))------))...)))))...))))))))....)))...))))...-............... ( -38.80)
>consensus
GAAGUGAAACUGAAACUGAAGCUCAAGCUCAAGC__________________UGAAG______CUAUAUUCCUGAUGCCUCAGCAGGAGGCGGGCGGCAAAAAAGAAAUCAAAUUAC
.......................................................................(((.((((((.....))))))..))).................... (-11.35 = -11.35 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:24 2006