| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,660,560 – 5,660,672 |
| Length | 112 |
| Max. P | 0.972902 |
| Location | 5,660,560 – 5,660,672 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.18 |
| Mean single sequence MFE | -20.72 |
| Consensus MFE | -13.44 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5660560 112 - 23771897 -CCUUGGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCCUUACCGUCCACCACCACC-UCCCCACUUCGCAGCU-ACCCG-CCACUUUU -...((((.(((((.......))))).....(((.((((....))))((((........))))........)))..........-................-....)-)))..... ( -23.50) >DroSec_CAF1 33309 114 - 1 -CCUCUGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCCUUACCGUCCAUCUCCACC-CCGCCACUUCGCAGCGCACACGCCCCCUUUU -...((((.(((((.......))))).....(((.((((....))))((((........))))........)))..........-..........)))).((....))........ ( -23.00) >DroSim_CAF1 34367 114 - 1 -CCUCUGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCCUUAGCGUCCAUCUCCACC-CCGCCACUUCGCAGCGCACAUCCCCCCUUUU -.(.((((.(((((.......))))).....(((.((((....))))((((........))))........)))..........-..........)))).)............... ( -22.80) >DroEre_CAF1 36546 97 - 1 -CCUCUGCAGGCU-AUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCU--------------UCCCUGCCCCACUUCGCAGCCC---CUCCCCCUUUU -.....(((((..-.....................((((....))))((((........))))...--------------..)))))...............---........... ( -19.30) >DroYak_CAF1 33977 95 - 1 -CCUCUGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCC--------------CAUC-CCCCCACUUCGCUGCUC---C--CCCCCUUC -.....((((((((.......))))......((..((((....))))((((........))))...--------------....-........)).))))..---.--........ ( -18.90) >DroAna_CAF1 33517 89 - 1 GUCUCUAAAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCCUCCUUCUUCCG----------CCACCACA-UCCC----------------CCCUCCCAUUU (((......(((((.......))))).....))).((((....))))((((....)))).......----------........-....----------------........... ( -16.80) >consensus _CCUCUGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCC___________C_CCACC_CCCCCACUUCGCAGCGC___CCCCCCCUUUU ......((.(((((.......))))).........((((....))))((((........))))................................))................... (-13.44 = -13.97 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:18 2006