| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,659,187 – 5,659,282 |
| Length | 95 |
| Max. P | 0.695777 |
| Location | 5,659,187 – 5,659,282 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.23 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -13.45 |
| Energy contribution | -15.68 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5659187 95 - 23771897 UAUGCAAAUUGGAUUUUUCAGAGCUUGUUUACAGAGCGGCCAACGAGGGAAAAAUAUUAAUUGCCCUAGAAAAGUAGUCAAUCGAAUUUGCAUAU ((((((((((.((((.......((((.......))))(((..((.((((...(((....))).))))......)).))))))).)))))))))). ( -24.70) >DroSec_CAF1 31971 95 - 1 UAUGCAAAUUGGAUUUUUCAGAGCUUGUUUACAGAGCGGCCAACGAGGGAAAAAUAUUAAUUGCCCUAGAAAAGUAGUCAAUCGAAUUUGCAUAU ((((((((((.((((.......((((.......))))(((..((.((((...(((....))).))))......)).))))))).)))))))))). ( -24.70) >DroSim_CAF1 33009 95 - 1 UAUGCAAAUUGGAUUUUUCAGAGCUUGUUUACAGAGCGGCCAACGAGGGAAAAAUAUUAAUUGCCCUAGAAAAGUAGUCAAUCGAAUUUGCAUAU ((((((((((.((((.......((((.......))))(((..((.((((...(((....))).))))......)).))))))).)))))))))). ( -24.70) >DroEre_CAF1 35219 94 - 1 UAUGCAAAUUGGAUUUUUCAGUGCUUGUUUACAGAGCUACCAACGAGGGAA-AAUAUUAAUUGCCCCAGAAAAGUAGUCAAUCGAAUUUGCAUAU ((((((((((.((((((((.((((((.......)))).))......(((..-(((....)))..))).)))).......)))).)))))))))). ( -23.01) >DroYak_CAF1 32620 94 - 1 UAUGCAAAUUGGAUUUUUCAUUGCUUGUUUACAGUGCGACCGACGAGGGAA-AAUAUUAAUUGCCCUAGAAAAGUAGUCAAUCGAAUUUGCAUAU ((((((((((.((((.....(((((((....))).))))..(((.((((..-...........)))).........))))))).)))))))))). ( -24.12) >DroAna_CAF1 32255 72 - 1 UGUGUAAAUUGG--UUUUCAG------GUUACAGA-----CAAAAAUAU--AAAAAUUAAUUGCC--AGGAAAAAAGUUUACUAGA------CAU ...(((((((..--(((((.(------((......-----.........--...........)))--.)))))..)))))))....------... ( -10.57) >consensus UAUGCAAAUUGGAUUUUUCAGAGCUUGUUUACAGAGCGGCCAACGAGGGAAAAAUAUUAAUUGCCCUAGAAAAGUAGUCAAUCGAAUUUGCAUAU ((((((((((.((((((((...((((.......))))........((((...(((....))).)))).))))).......))).)))))))))). (-13.45 = -15.68 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:17 2006