Locus 2052

Sequence ID 3L_DroMel_CAF1
Location 5,658,029 – 5,658,137
Length 108
Max. P 0.999518
window3200

overview

Window 0

Location 5,658,029 – 5,658,137
Length 108
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 91.57
Mean single sequence MFE -20.33
Consensus MFE -18.90
Energy contribution -19.30
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.25
Structure conservation index 0.93
SVM decision value 3.68
SVM RNA-class probability 0.999518
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5658029 108 + 23771897
UUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUCCCACAACUGCUCAGCACCUUACA-AUUCACACACACACAC----GCACACCCACCCACC
.(((((((.....(..(((((((...)))))))..)(.(((.((((.(((.................))).)))).)-)).)))))))).....----............... ( -20.83)
>DroSec_CAF1 30856 100 + 1
UUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUAAAGCUGCCAUCCCACAACUGCUCAGCACCUCACA-AUUCACACACAC--------GCAC----ACCCACC
.(((((((.....(..(((((((...)))))))..).........((((.((.........))..))))........-....))))))).--------....----....... ( -20.30)
>DroSim_CAF1 31872 100 + 1
UUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUCCCACAACUGCUCAGCACCUCACA-AUUCACACACAC--------GCAC----ACCCACC
.(((((((.....(..(((((((...)))))))..).........((((.((.........))..))))........-....))))))).--------....----....... ( -20.30)
>DroEre_CAF1 34075 98 + 1
UUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUCCCACAACUGCUCAGCACCUCACG-AUUCACACA----------CGCAC----ACCCACC
.(((((((.....(..(((((((...)))))))..).........((((.((.........))..))))........-......)))----------)))).----....... ( -19.90)
>DroYak_CAF1 31478 109 + 1
UUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUUCCACAACUGCUCAGCACCUCACAAAUUCACACACACACACACCCGCAC----ACCCACC
.(((((((.....(..(((((((...)))))))..).........((((.((.........))..)))).............))))))).............----....... ( -20.30)
>consensus
UUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUCCCACAACUGCUCAGCACCUCACA_AUUCACACACAC________GCAC____ACCCACC
.(((((((.....(..(((((((...)))))))..).........((((.((.........))..)))).............)))))))........................ (-18.90 = -19.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:16 2006