Locus 2051

Sequence ID 3L_DroMel_CAF1
Location 5,656,809 – 5,656,905
Length 96
Max. P 0.536395
window3199

overview

Window 9

Location 5,656,809 – 5,656,905
Length 96
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 77.83
Mean single sequence MFE -31.44
Consensus MFE -15.82
Energy contribution -16.26
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -1.82
Structure conservation index 0.50
SVM decision value 0.01
SVM RNA-class probability 0.536395
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5656809 96 - 23771897
GUUGGCCGGCAAAUGCGCUUAAAUUUCAUAAGCCACAUGG------CGGCAUCCAAAUACCA---------GAGCUGCUUCUGCUUUUUUGACCACCGCAAAGGGGCAAAU
....((((.((..((.(((((.......)))))))..)).------))))...........(---------((((.......)))))((((.((.((.....)))))))). ( -26.10)
>DroSec_CAF1 29665 88 - 1
GUUGGCCGGCAAAAGAGCUUAAAUUCCAUAAGCCACAUGG------C----------------AGCAUUCUGAGCUGCUUCUGCUUU-UUGGCCACCGCAAAGGGGCAAAU
....((((((.(((((((........(((.......)))(------(----------------(((.......)))))....)))))-)).))).((.....))))).... ( -27.60)
>DroSim_CAF1 30649 104 - 1
GUUGGCCGGCAAAAGCGCUUAAAUUCCAUAAGCCACAUGG------CGGCAUCCGAAUGCCAGAGCAUUCUGAGCUGCUUCUGCUUU-UUGGCCACCGCAAAGGGGCAAAU
....((((((.((((((((((.......))))).....((------((((.((.((((((....)))))).))))))))...)))))-...))).((.....))))).... ( -39.00)
>DroEre_CAF1 32880 95 - 1
GUCGGCCGGCAAAUGCGCUUAAAUUUCAUAAGCCACAUG---------GCAUCCAAAUGCCAGAGCUUUCUGAGCUG------CUCU-UCGGCCACCGCAAAGGGGCAUAU
(((((((((....((.(((((.......)))))))..((---------((((....))))))((((..........)------))).-)))))).((.....))))).... ( -31.60)
>DroYak_CAF1 30255 104 - 1
GUUGGCCGGCAGAUGCGCUUAAAUUUCAUAAGCCACAUGCAGCAUUCAGCAUCCGAAUGCCAGAGAACUCUGAGCUG------CUUU-UCGGCCACCGCAAAGGGGCAAAU
(.(((((((....((.(((((.......)))))))...(((((.....((((....))))((((....)))).))))------)...-))))))).)((......)).... ( -32.90)
>consensus
GUUGGCCGGCAAAUGCGCUUAAAUUUCAUAAGCCACAUGG______C_GCAUCCAAAUGCCAGAGCAUUCUGAGCUGCUUCUGCUUU_UUGGCCACCGCAAAGGGGCAAAU
....((((((....(.(((((.......)))))).....................................((((.......)))).....))).((.....))))).... (-15.82 = -16.26 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:15 2006