| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 571,284 – 571,383 |
| Length | 99 |
| Max. P | 0.648908 |
| Location | 571,284 – 571,383 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 88.22 |
| Mean single sequence MFE | -23.52 |
| Consensus MFE | -19.62 |
| Energy contribution | -20.38 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 571284 99 + 23771897 GCCUGCCAUUUUCCUUUUCAUGCCGCCGCAGAUCUGCGCAAAUUGCGUGGUCUCCGCCCUCCGGUCUCCCAUCUCCCAUCUCCGAUCUCCGGCCGUACA ....................(((.((((.(((((.((((.....))))((...(((.....)))...))..............))))).)))).))).. ( -25.50) >DroSec_CAF1 2721 99 + 1 GCCUGCCUUUUUCCUUUCCAUGCCGCCGCAGAUCUGCGCAAAUUGCGUGGUCUCCGCCCUCCGAUCUCCCAUCUCCCAUUUCCGAUCUCCGGCCGUACA ....................(((.((((.(((((.((((.....))))((((..........)))).................))))).)))).))).. ( -22.60) >DroSim_CAF1 3146 99 + 1 GCCUGCCAUUUUCCUUUCCAUGCCGCCGCAGAUCUGCGCAAAUUGCGUGGUCUCCGCCCUCCGAUCUCCCAUCUCCCAUUUCCGAUCUCCGGCCGUAUA ...................((((.((((.(((((.((((.....))))((((..........)))).................))))).)))).)))). ( -23.90) >DroEre_CAF1 2852 85 + 1 GCCUGCCAUUUUCCUUUUCAUGCCGCCGCAGAUCUGCGCAAAUUGCGUGGUCUCCGCCCUGCGAUCCCCCCG--------------CUCCGGCCGUAUA ...................((((.((((((((((.((((.....)))))))))..))...(((.......))--------------)...))).)))). ( -22.10) >consensus GCCUGCCAUUUUCCUUUCCAUGCCGCCGCAGAUCUGCGCAAAUUGCGUGGUCUCCGCCCUCCGAUCUCCCAUCUCCCAUUUCCGAUCUCCGGCCGUACA ....................(((.((((.(((((.((((.....))))(((....))).........................))))).)))).))).. (-19.62 = -20.38 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:55 2006