| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,635,613 – 5,635,708 |
| Length | 95 |
| Max. P | 0.546514 |
| Location | 5,635,613 – 5,635,708 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.33 |
| Mean single sequence MFE | -16.30 |
| Consensus MFE | -8.96 |
| Energy contribution | -9.35 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5635613 95 - 23771897 AACAUUACCAA--------CAUUA-UUCUUAGCAAAAAAUUUCUGCAGAACAUCAUCAAGUACCUCCAGCAAAUGGAGCAGGAGAAACAGCCAAAGAAGCCAAU ...........--------.....-(((((.((......(((((((.((......)).......((((.....))))))))))).....))..)))))...... ( -14.80) >DroGri_CAF1 6746 98 - 1 -----CUCUAAUCCCGUUCCAUU-UCGCGCAGCAACAAAUUUCUGCAAAACAUUUUGAAAUACCAUCAGAAACUGGAGCAGCGCAAGCCGAAGCAGAAGCCACC -----.(((......((((((((-((..((((.((....)).)))).........(((.......))))))).)))))).((....))......)))....... ( -19.80) >DroSec_CAF1 8633 90 - 1 -----UACAAA--------CAUUA-UUCUUAGCAAAAAAUUUCUGCAGAACAUUAUUAAGUACCUCCAGCAAAUGGAGCAUGAGAAACCCGAAAAGAAGCCAAU -----......--------.....-(((((((((.........))).................(((((.....)))))..)))))).................. ( -11.90) >DroSim_CAF1 9031 91 - 1 ----UUACAAA--------CAUUA-UUCUUAGCAAAAAAUUCCUGCAGAACAUUAUUAAGUACCUCCAGCAAAUGGAGCAGGAGAAACCGGCAAAGAAGCCCAU ----.......--------.....-(((((.((......(((((((...((........))...((((.....)))))))))))......)).)))))...... ( -20.40) >DroEre_CAF1 8807 91 - 1 ----UUAAAAA--------CAUUA-UUCUUAGCAAAAAGUUCCUGCAGAACAUCAUCAAGUAUCUCCAGCAAAUGGAGCAGGAGAAACCGCCAAAGAAGACACG ----.......--------.....-(((((.((......(((((((.((......)).......((((.....))))))))))).....))..)))))...... ( -18.80) >DroYak_CAF1 8514 91 - 1 ----UUAAUAA--------CAUAA-UCCUUAGCAAAAAAUUUCUGCAGAACAUCAUCAAGUAUCUCCAGCGAAUGGAGCAGGAGAAACCGCCAAAAAAGACACC ----.......--------.....-..(((.(((.........))).............((.(((((.((.......)).))))).))........)))..... ( -12.10) >consensus ____UUACAAA________CAUUA_UUCUUAGCAAAAAAUUUCUGCAGAACAUCAUCAAGUACCUCCAGCAAAUGGAGCAGGAGAAACCGCCAAAGAAGCCAAU .......................................(((((((...((........))...((((.....))))))))))).................... ( -8.96 = -9.35 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:11 2006