Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,634,035 – 5,634,125 |
Length | 90 |
Max. P | 0.527425 |
Location | 5,634,035 – 5,634,125 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 76.91 |
Mean single sequence MFE | -20.38 |
Consensus MFE | -12.80 |
Energy contribution | -12.75 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.44 |
Mean z-score | -1.26 |
Structure conservation index | 0.63 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527425 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5634035 90 - 23771897 UAACAAAGUGAUUCCGUGGACACAUAUUGAUCGGGUGCCUUGGCUCAAAAAUGGCAUUAUAAAAGGUAAUGUCUUAUUU------AUAUU---AUUAAG ........(((..(((.((.(((...........))))).))).))).....((((((((.....))))))))......------.....---...... ( -14.60) >DroSec_CAF1 7051 93 - 1 UAACAAAGUGAUGCCGUGGACACAUAUUGAUCGGGUGUCCUGGCUCAAAAAUGGCAUUAUAAAAGGUAAGUUAUUAUUU------AUAUUCAAGUUAAG ((((....(((.((((.((((((...........)))))))))))))..((((((.((((.....))))))))))....------........)))).. ( -22.10) >DroSim_CAF1 7450 93 - 1 UAACAAAGUGAUGCCGUGGACACAUAUUGAUCGGGUGUCCUGGCUCAAAAAUGGCAUUAUAAAAGGUAAGUUAUUAUUU------AUAUUCAAUUUAAG ........(((.((((.((((((...........)))))))))))))..((((((.((((.....))))))))))....------.............. ( -20.10) >DroEre_CAF1 7221 95 - 1 UAACAAGGUGAUGCCGUGGACACAUAUUGAUCGGGUUUCCUGGCUUAAAAAUGGCAUUAUAAAAGGUAAGUCCAUAU----UUUGAUAUUAUACAUAAC ...(((((((((((((((....))).(((((((((...))))).))))....))))))))....((.....))....----)))).............. ( -18.30) >DroWil_CAF1 5878 95 - 1 UAGAAAAGUGAUGCCUUGGUCGGAAAUUGAUACCGUAACUUGGGUGAAAAAGGGUUUGGUGCAAGGUAAGUUUUGCU----CAGGACAUGACUUUUAAC ...((((((.((((((.((.(((((.(((.(((((.(((((...(....).)))))))))))))......)))))))----.))).))).))))))... ( -24.60) >DroYak_CAF1 6919 99 - 1 UAAGAAAGUGAUGCCAUGGACACAUAUUGAUCGCGUGUCCUGGCUUAAAAAUGGCAUUAUAAAAGGUAAGUCCUUAUUUAUUUGGAUAUUAUACAUAAA .......((((((((((((((((...........))))))..........)))))))))).....((((((((..........)))).))))....... ( -22.60) >consensus UAACAAAGUGAUGCCGUGGACACAUAUUGAUCGGGUGUCCUGGCUCAAAAAUGGCAUUAUAAAAGGUAAGUUCUUAUUU______AUAUUAAACUUAAG .......((((((((((((((((...........))))))..........))))))))))....................................... (-12.80 = -12.75 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:09 2006