Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,630,714 – 5,630,812 |
Length | 98 |
Max. P | 0.636962 |
Location | 5,630,714 – 5,630,812 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.03 |
Mean single sequence MFE | -15.19 |
Consensus MFE | -13.08 |
Energy contribution | -12.80 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.20 |
Mean z-score | -1.18 |
Structure conservation index | 0.86 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636962 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5630714 98 + 23771897 -------A-AUCGUUUAACUAAUUU---UCCCCAUUUUCACCACCUAC--CCACCAA--CCAC-CCAACAGAAAUCGCCGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA -------.-................---(((....((((.........--.......--....-......)))).....))).((((((((((........))..)))))))). ( -14.77) >DroSec_CAF1 3742 98 + 1 -------A-AUCCUUUAACUAAUUU---UCCCCAUUUUCACCACCUAC--CCACCAA--CCAC-CCAACAGAAAUCGCCGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA -------.-................---(((....((((.........--.......--....-......)))).....))).((((((((((........))..)))))))). ( -14.77) >DroSim_CAF1 4153 97 + 1 -------A-AUCCUUUAACUAAUU----UCCCCAUUUUCACCACCUAC--CCACCAA--CCAC-CCAACAGAAAUCGCCGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA -------.-...............----(((....((((.........--.......--....-......)))).....))).((((((((((........))..)))))))). ( -14.77) >DroEre_CAF1 3907 100 + 1 -------C-AUCCUCCUACCAAUUU---CC-CCAUUUUCACCACCUAU--CCACCAACUACAAUCCAACAGAAAUCGAAGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA -------.-....((((.(..((((---(.-.................--....................))))).).)))).((((((((((........))..)))))))). ( -15.76) >DroYak_CAF1 3478 94 + 1 -------AAAUCCUUUGACUAAUUU---UCACCA-----CCCACCUAU--CCACGAA--ACAA-CCAACAGAAAUCGCAGGACUCGUCGCAUGCGCUGCUAUAACUGCGGCGAA -------...((((.(((.....((---((....-----.........--.......--....-......))))))).)))).((((((((..............)))))))). ( -13.75) >DroAna_CAF1 444 105 + 1 CACUGAUA-AACCCUCCACUGAUUACUCUCCC-----UCCCUGAUUACCCCCCUCAA--AAAC-CCAAUAGCAAUCGCAGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA ........-.....(((..((((((.......-----....))))))..........--....-......((....)).))).((((((((((........))..)))))))). ( -17.30) >consensus _______A_AUCCUUUAACUAAUUU___UCCCCAUUUUCACCACCUAC__CCACCAA__ACAC_CCAACAGAAAUCGCAGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA ...................................................................................((((((((((........))..)))))))). (-13.08 = -12.80 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:08 2006