| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,628,873 – 5,628,976 |
| Length | 103 |
| Max. P | 0.536910 |
| Location | 5,628,873 – 5,628,976 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.19 |
| Mean single sequence MFE | -20.58 |
| Consensus MFE | -13.60 |
| Energy contribution | -13.06 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5628873 103 - 23771897 UGGCUGGUGGUCCUCCUUUCCAAGCCAUUUUCCAGCUGUACGUUCUCCAUGCUGACUUCUUGGGUUUUUAGUUUA--UUUUUCUUAGUUUAAAAUCCACUUCAAU (((((((.((....))...)).))))).....((((..............))))......((((((((....(((--.......)))...))))))))....... ( -20.24) >DroEre_CAF1 2010 103 - 1 UGGCUGGUGGUCCUUCUUUCCAAGCCAAUUUCCAGCUGUAUGUUUUCCAUGCUGACUUCUUGUGUCUCUGACGUU--UUCUUUUUAGAUUGGAAUAUACUUAAAU .((((((((((............))))....))))))((((((..((((....(((.......)))(((((.(..--....).))))).))))))))))...... ( -21.50) >DroYak_CAF1 1534 105 - 1 UGGCUGCUGGUCCUCCUGUUCAAGCCAUUUUCCAACUGUAGAUUUUCCAUGCUGACUUCUUGUGUUUUUCAAUUUGAUUGAUUUUAAAUUGGAAUAUACUUAAAU (((((((.((....)).))...)))))..................................((((.(((((((((((......))))))))))).))))...... ( -20.00) >consensus UGGCUGGUGGUCCUCCUUUCCAAGCCAUUUUCCAGCUGUACGUUUUCCAUGCUGACUUCUUGUGUUUUUAAAUUU__UUCUUUUUAGAUUGGAAUAUACUUAAAU (((((((.((....))...)).))))).....((((..............))))......((((((((......................))))))))....... (-13.60 = -13.06 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:07 2006