Locus 2043

Sequence ID 3L_DroMel_CAF1
Location 5,621,461 – 5,621,581
Length 120
Max. P 0.565115
window3190

overview

Window 0

Location 5,621,461 – 5,621,581
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.56
Mean single sequence MFE -39.85
Consensus MFE -25.91
Energy contribution -26.88
Covariance contribution 0.98
Combinations/Pair 1.39
Mean z-score -1.34
Structure conservation index 0.65
SVM decision value 0.06
SVM RNA-class probability 0.565115
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5621461 120 + 23771897
CCAGUGGUGCGGGUUCGGCCACAAAUCUGCAUUUAUUGCAAACCAGCACCCAAAUGCUGAACCAUCCGCUGAUGCAGCCCCUCACACCCCUGCAGCGUUUGUCCCCGCUGAGGAUAUCCC
...((((.(.(((((((((........((((.....))))...(((((......)))))........)))))....)))))))))...(((.(((((........))))))))....... ( -35.90)
>DroVir_CAF1 8765 120 + 1
CCAGCGGCGGCGGCUCGGCCUCCAAUUUGCAUCUGCUGCAGAGCAGCACUCAAAUGCUGAACCAUCCGCUGAUGCAGCCGCUGACGCCGCUGCAGCGUCUCUCGCCGCUCCGCAUCUCGC
...((((.(((((((((((......((((((.....)))))).(((((......)))))........)))))((((((.((....)).)))))).........))))))))))....... ( -49.20)
>DroGri_CAF1 2922 120 + 1
CUAGUGGCGGUGGCUCCGCUUCCAACUUGCAUCUGUUGCAGAGCAGCACACAAAUGUUGAAUCAUCCGUUGAUGCAACCAUUGACACCGUUGCAACGUCUAUCGCCGCUGCGCAUCUCCC
.(((((((((((((...((.........))....(((((((..(((((......)))))........((..(((....)))..))....)))))))).)))))))))))).......... ( -37.30)
>DroWil_CAF1 21958 120 + 1
CGAGUGGUGCCGGCUCAGCAUCAAAUCUUCAUCUGUUGCAGAGUAGCUCACAAAUGCUUAACCAUCCACUGAUGCAGCCAUUGACACCAUUGCAGAGAUUAUCCCCAUUGAGAAUAUCAC
..((((((((.((((..((((((..(((.((.....)).)))..(((........)))...........))))))))))...).)))))))...((.(((.((......)).))).)).. ( -25.60)
>DroMoj_CAF1 2829 120 + 1
CCAGUGGCGGCGGCUCCGCCUCCAAUUUGCAUCUGCUGCAGAGCAGCACCCAGAUGCUGAACCAUCCGCUGAUGCAGCCGCUGACGCCGCUGCAGCGCCUCUCCCCGCUGCGCAUCUCGC
.(((((((((((....)))).......((((((((((((...))))))....((((......))))....))))))))))))).....((.((((((........))))))))....... ( -51.50)
>DroAna_CAF1 3334 120 + 1
CGAGCGGCGCUGGUUCCGCCUCCAAUUUGCAUUUGCUGCAGAGUAGCACCCAGAUGCUGAACCACCCGCUGAUGCAGCCGCUCACCCCGCUGCAGCGCCUGUCGCCCCUGAGGAUCUCCC
.(((((((..((((((.((.....(((((....((((((...))))))..))))))).))))))...((....)).))))))).....((.((((...)))).))......((....)). ( -39.60)
>consensus
CCAGUGGCGCCGGCUCCGCCUCCAAUUUGCAUCUGCUGCAGAGCAGCACCCAAAUGCUGAACCAUCCGCUGAUGCAGCCGCUGACACCGCUGCAGCGUCUAUCCCCGCUGAGCAUCUCCC
.((((((((.(((((..((.((...((((((.....)))))).(((((......)))))...........)).)))))))....))))))))(((((........))))).......... (-25.91 = -26.88 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:06 2006