Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,616,919 – 5,617,010 |
Length | 91 |
Max. P | 0.984164 |
Location | 5,616,919 – 5,617,010 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 88.56 |
Mean single sequence MFE | -16.73 |
Consensus MFE | -13.82 |
Energy contribution | -14.33 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.78 |
Structure conservation index | 0.83 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984164 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5616919 91 - 23771897 AGAAAGUCGCAUACACAUACAC----ACACAACAACCGGCAUUGCACCAAUACCCAUUGCACUGCCAUACGAACGCAUCCCGUUAAAGAUUCUCA .((.((((..............----...........((((.((((...........)))).)))).....((((.....))))...)))).)). ( -15.80) >DroSec_CAF1 881 95 - 1 AGAAAGUCGCAUACACACACACACACACACAACAACCGGCAUUGCACCAAUACCCACUGCACUGCCAUACGAACGCAUCCCGUUAAAGAUUCUCA .((.((((.............................((((.((((...........)))).)))).....((((.....))))...)))).)). ( -15.80) >DroSim_CAF1 883 95 - 1 AGAAAGUCGCAUACACACACACACUCACACAACAACCGGCAUUGCACCAAUACUCACUGCACUGCCAUACAAACGCAUCCCGUUAAAGAUUCUCA .((.((((.............................((((.((((...........)))).)))).....((((.....))))...)))).)). ( -15.70) >DroEre_CAF1 899 89 - 1 AGAAAGGCGCACGCACAC------ACACACAGCAACCGGCAUUGCACCAAUGCCCAUUGCACUGCCACACGAACGCAUCCCGUCCAAGAUUCUCA ((((.((((....)....------.......((((..(((((((...)))))))..))))...)))....(.(((.....))).)....)))).. ( -19.60) >consensus AGAAAGUCGCAUACACACACAC__ACACACAACAACCGGCAUUGCACCAAUACCCACUGCACUGCCAUACGAACGCAUCCCGUUAAAGAUUCUCA .((.((((.............................((((.((((...........)))).)))).....((((.....))))...)))).)). (-13.82 = -14.33 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:03 2006