Locus 2040

Sequence ID 3L_DroMel_CAF1
Location 5,615,898 – 5,615,990
Length 92
Max. P 0.535241
window3186

overview

Window 6

Location 5,615,898 – 5,615,990
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 83.74
Mean single sequence MFE -26.99
Consensus MFE -19.33
Energy contribution -20.08
Covariance contribution 0.75
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.72
SVM decision value 0.00
SVM RNA-class probability 0.535241
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5615898 92 - 23771897
UGCACUUGCACUUGCGAAUUGCAUUUUGAUUCUGU-UCAGCGAGUGCGGAAAUGUGCGAAAACGAUCUGCAGAAAGUGAUUUCUGGCUGCUCG
.((((((((((((((((((..............))-)).))))))))))....)))).....(((.(.(((((((....))))).)).).))) ( -29.14)
>DroSec_CAF1 35048 92 - 1
UGCACUUGCACUUGCGAAUUGCAUUUUGAUUCUGU-UCUGCGAGUGCGGAAAUGUGCGAAAACGAUCUGCAGAAAGUGAUUUCUGGCUGCUCG
.((((((((((((((((((..............))-)).))))))))))....)))).....(((.(.(((((((....))))).)).).))) ( -29.14)
>DroEre_CAF1 36357 92 - 1
UGCACUUGCACUUGCGAAUUGCAUUUUGAUUCUGU-UCUGCGAGUGCGGAAAUGUGCGAAAACGAUCUGCAGAAAGUGAUUUCUGGCUGCUCG
.((((((((((((((((((..............))-)).))))))))))....)))).....(((.(.(((((((....))))).)).).))) ( -29.14)
>DroYak_CAF1 34011 93 - 1
UGCACUUGCACUUGCGAAUUGCAUUUUGAUUCUGUGUCUGCGAGUGCGGAAAUGUGCGAAAACGAUCUGCAGAAAGUGAUUUCUGGCUGCUCG
.(((((((((((((((....((((.........)))).)))))))))))....)))).....(((.(.(((((((....))))).)).).))) ( -29.00)
>DroAna_CAF1 39928 78 - 1
UGCACUUGCACUUGCGAAUUGCAUUUUGAU---------------GCGGAAAUGUGCGAAAACGAUAUGCAGAAAGUGAUUUCUGCCAGCUAU
.((((((((....)))).((((((....))---------------))))....))))...........(((((((....)))))))....... ( -22.30)
>DroPer_CAF1 43675 77 - 1
UGCACUUGCACUUGCGAAUAGCU---------------GGCGAGUGCGGAAAUGUGCGAAAACGAUAUUCGGAAAGUGUUUUUCUGUGGCAC-
.((((((((....((.....)).---------------.))))))))(((((.(..(.....((.....))....)..).))))).......- ( -23.20)
>consensus
UGCACUUGCACUUGCGAAUUGCAUUUUGAUUCUGU_UCUGCGAGUGCGGAAAUGUGCGAAAACGAUCUGCAGAAAGUGAUUUCUGGCUGCUCG
.((((((((((((((........................))))))))))....))))............((((((....))))))........ (-19.33 = -20.08 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:02 2006