Locus 204

Sequence ID 3L_DroMel_CAF1
Location 570,786 – 570,878
Length 92
Max. P 0.817000
window301

overview

Window 1

Location 570,786 – 570,878
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 90.40
Mean single sequence MFE -23.47
Consensus MFE -23.64
Energy contribution -23.95
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.39
Structure conservation index 1.01
SVM decision value 0.67
SVM RNA-class probability 0.817000
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 570786 92 + 23771897
CUCCCCCUACACCACCAAAUGAAAUAUGUCUGUGCCAUAUUUCCGAUGUCAGAGUCGCUUGGGGCAUACGAAAUGUCGCAUGUUUCUCUGAC
....................((((((((.......))))))))....(((((((..((.((.(((((.....))))).)).))..))))))) ( -25.20)
>DroSec_CAF1 2216 92 + 1
CACCCCCUACACCACCAAAUGAAAUAUGUCUGUGCCAUAUUUCCGAUGUCAGAGUCGCUUGGGGCAUACGAAAUGUCGCAUGUUUCUCUGAC
....................((((((((.......))))))))....(((((((..((.((.(((((.....))))).)).))..))))))) ( -25.20)
>DroSim_CAF1 2641 92 + 1
CACCCCCUACACCACCAAAUGAAAUAUGUCUGUGCCAUAUUUCCGAUGUCAGAGUCGCUUGGGGCAUACGAAAUGUCGCAUGUUUCUCUGAC
....................((((((((.......))))))))....(((((((..((.((.(((((.....))))).)).))..))))))) ( -25.20)
>DroEre_CAF1 2378 85 + 1
-----CCUGCCUUCCCA--AGAAAAAUGCCUGUGCCAUAUUUCCGAUGUCAGAGUCGCUGGGGGCGUACGAAAUGUCGCAUGUUUCUCUGAC
-----............--.((((.(((.......))).))))....(((((((..((..(.(((((.....))))).)..))..))))))) ( -18.30)
>consensus
CACCCCCUACACCACCAAAUGAAAUAUGUCUGUGCCAUAUUUCCGAUGUCAGAGUCGCUUGGGGCAUACGAAAUGUCGCAUGUUUCUCUGAC
....................((((((((.......))))))))....(((((((..((.((.(((((.....))))).)).))..))))))) (-23.64 = -23.95 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:54 2006