Locus 2037

Sequence ID 3L_DroMel_CAF1
Location 5,606,515 – 5,606,621
Length 106
Max. P 0.716156
window3182

overview

Window 2

Location 5,606,515 – 5,606,621
Length 106
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 96.90
Mean single sequence MFE -28.71
Consensus MFE -26.65
Energy contribution -26.98
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.04
Structure conservation index 0.93
SVM decision value 0.39
SVM RNA-class probability 0.716156
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5606515 106 + 23771897
GCA---GAUGGAGCGAGAUGGCGACAGAUAAUUGGCGACGUAAGGCAGAAAAACCUUGACUUUGACUUUAAAUGACUCGACAACU--GAUCGCACGCUAACACGCUCCAAC
...---..(((((((.(.(((((...(((..(((.(((..(((((((((...........)))).)))))......))).)))..--.)))...))))).).))))))).. ( -28.90)
>DroSec_CAF1 25678 106 + 1
GCA---GAUGGAGCGAGAUGGCGACAGAUAAUUGGCGACGUAAGGCAGAAAAACCUUGACUUUGACUUUAAAUGACUCGACAACU--GAUCGCACGCUAACACGCUCCAAC
...---..(((((((.(.(((((...(((..(((.(((..(((((((((...........)))).)))))......))).)))..--.)))...))))).).))))))).. ( -28.90)
>DroSim_CAF1 24962 106 + 1
GCA---GAUGGAGCGAGAUGGCGACAGAUAAUUGGCGACGUAAGGCAGAAAAACCUUGACUUUGACUUUAAAUGACUCGACAACU--GAUCGCACGCUAACACGCUCCAAC
...---..(((((((.(.(((((...(((..(((.(((..(((((((((...........)))).)))))......))).)))..--.)))...))))).).))))))).. ( -28.90)
>DroEre_CAF1 26740 106 + 1
GCA---GAUGGAGCGAGAUGGCGACAGAUAAUUGGCGACGUAAGGCAGAAAAACCUUGACUUUGACUUUAAAUGACUCGACAACU--GAUCGCACGCUAACACGCUCCAAC
...---..(((((((.(.(((((...(((..(((.(((..(((((((((...........)))).)))))......))).)))..--.)))...))))).).))))))).. ( -28.90)
>DroYak_CAF1 25221 106 + 1
GCA---GAUGGAGCGAGAUGGCGACAGUUAAUUGGCGACGUAAGGCAGAAAAACCUUGACUUUGACUUUAAAUGACUCGACAACU--GAUCGCACGCUAACACGCUCCAAC
...---..(((((((.(.(((((.(((....)))((((..(((((........)))))...((((.((.....)).)))).....--..)))).))))).).))))))).. ( -28.90)
>DroAna_CAF1 31029 111 + 1
GCAGGCGGUGGAGCGAGAUGGCAGGAGAUAAUUGGCGACGUAAGGCAGAAAAACCUUGACUUUGACUUUAAAUGACUCGACAACUGCGAUCGCACGCUAACACGCUCCAAC
........(((((((.(.((((..(((......(((((.((((((........)))).)).))).))........)))......(((....))).)))).).))))))).. ( -27.74)
>consensus
GCA___GAUGGAGCGAGAUGGCGACAGAUAAUUGGCGACGUAAGGCAGAAAAACCUUGACUUUGACUUUAAAUGACUCGACAACU__GAUCGCACGCUAACACGCUCCAAC
........(((((((.(.(((((.(((....)))((((..(((((........)))))...((((.((.....)).)))).........)))).))))).).))))))).. (-26.65 = -26.98 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:58 2006