Locus 2033

Sequence ID 3L_DroMel_CAF1
Location 5,597,974 – 5,598,082
Length 108
Max. P 0.800723
window3176

overview

Window 6

Location 5,597,974 – 5,598,082
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.02
Mean single sequence MFE -30.36
Consensus MFE -12.52
Energy contribution -14.31
Covariance contribution 1.78
Combinations/Pair 1.23
Mean z-score -2.52
Structure conservation index 0.41
SVM decision value 0.62
SVM RNA-class probability 0.800723
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5597974 108 - 23771897
AUCUGUCGAGGUU-------UUUCAUUUCGAUGUGUU--U-UUUCACCGCUUUCUGGGGUUGGGAACAAUAGUC-GAAUGGGAA-AAUUUCCCAUUCCGCGCGAAAAUUCUCGAGUUUUU
.....(((((..(-------((((.....(((.((((--(-((..(((.(.....).))).)))))))...)))-((((((((.-....)))))))).....)))))..)))))...... ( -35.30)
>DroGri_CAF1 16833 106 - 1
AUCUGUCGGCGCUGUC-UUUUUUCUUUACGUUUUCCU--U----UUCCACUU-UUGGGGUAGCU-UCAAC--AGGGAAUAAGAA---UUUUCCAUUGCGCGCGAAAAUUCUCAAGUUUUU
.....(((((((....-....(((((...........--.----((((.((.-((((((...))-)))).--)))))).)))))---.........)))).)))................ ( -19.55)
>DroSec_CAF1 17228 108 - 1
AUCUGUCGAGGUU-------UUUCAUUUCGACGUGUU--U-UUUCACCGCUUUCUGGGGUUGGAAACAAUAGUC-GAAUGGGAA-AAUUUCCCAUUCCGCGCGAAAAUUCUCGAGUUUUU
.....(((((..(-------((((.....(((.((((--(-((..(((.(.....).))).)))))))...)))-((((((((.-....)))))))).....)))))..)))))...... ( -37.20)
>DroYak_CAF1 16495 109 - 1
AUCUGUCGAGGUU-------UUUCAUUUCGAUGUGUU--UUUUUCACCGCUUUCUGGGGUUGCGAACAAUACUC-GAAUGGGAA-AAUUUCCCAUUCCGCGCGAAAAUUCUCGAGUUUUU
.....(((((..(-------((((.....((.(((((--.(((.((((.(.....).)).)).))).)))))))-((((((((.-....)))))))).....)))))..)))))...... ( -33.00)
>DroMoj_CAF1 18153 114 - 1
AUCUGUCGGCGUUGUCCUUUUUUCUUUACGUUUUCCU--U-UUUUUCCACUC--UGGGGUUGCU-GCAAUAGGGGGAAACCAAAUAAUUUUCUAUUGCGCGCGAAAAUUCUCAAGUUUUU
........((((.................((..((((--.-...........--.))))..)).-((((((((((....)).........))))))))))))((((((......)))))) ( -21.72)
>DroAna_CAF1 17765 110 - 1
AUCUGUCGAGGUU-------UUCCAUUUCGAUGUGUUCUU-UUUUUCUGCUUUUUGGGGUUGGGAACAAUAGUC-GAAUGGGAA-AAUUUCCCAUUCCGCGCGAAAAUUCUCGAGUUUUU
.....((((((((-------((((.....(((.(((((((-..(..(........)..)..)))))))...)))-((((((((.-....))))))))...).))))).))))))...... ( -35.40)
>consensus
AUCUGUCGAGGUU_______UUUCAUUUCGAUGUGUU__U_UUUCACCGCUUUCUGGGGUUGCGAACAAUAGUC_GAAUGGGAA_AAUUUCCCAUUCCGCGCGAAAAUUCUCGAGUUUUU
.....((((((..............(((((.((((...........(((.....))).((((....)))).....(((((((((....))))))))))))))))))..))))))...... (-12.52 = -14.31 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:52 2006