Locus 2032

Sequence ID 3L_DroMel_CAF1
Location 5,596,069 – 5,596,166
Length 97
Max. P 0.799820
window3175

overview

Window 5

Location 5,596,069 – 5,596,166
Length 97
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 90.75
Mean single sequence MFE -13.78
Consensus MFE -11.93
Energy contribution -12.67
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.87
SVM decision value 0.61
SVM RNA-class probability 0.799820
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5596069 97 - 23771897
GCUCGCUCUUUUCCAUUUCAUUUUCGGCUCUGGCCCAAAAUGUAUUUAACCAACCAGCAACAACAACAAAAAAGAUACAAUAACGUAUAAAAUCGAG
.((((((...........((((((.(((....))).)))))).............)))................((((......))))......))) ( -14.15)
>DroSec_CAF1 15362 94 - 1
ACUCGCUCUUUUCCAUUUCAUUUUCGGCUCUGGCCCAAAAUGUAUUUAACCAACCAGCAACA---ACCAAAAAUACACAAUAACGUACAAAAUCGAG
.((((((...........((((((.(((....))).)))))).............)))....---........(((........))).......))) ( -12.85)
>DroSim_CAF1 14579 94 - 1
GCUCGCUCUUUUCCAUUUCAUUUUCGGCUCUGGCCCAAAAUGUAUUUAACCAACCAGCAACA---ACAAAAAAUACACAAUAACGUAUAAAAUCGAG
.((((((...........((((((.(((....))).)))))).............)))....---.......((((........))))......))) ( -13.85)
>DroEre_CAF1 16543 89 - 1
GCUCGCUCUUUUCCAUUUCAUUUUCGGCUCUGGCCCAAAAUGUAUUUAAC----CAGCAACA---AA-AAAAGAAUACAAUAUCGUAUAAUAUCGAG
.((((((...........((((((.(((....))).))))))........----.)))....---..-......((((......))))......))) ( -14.25)
>consensus
GCUCGCUCUUUUCCAUUUCAUUUUCGGCUCUGGCCCAAAAUGUAUUUAACCAACCAGCAACA___ACAAAAAAUACACAAUAACGUAUAAAAUCGAG
.((((((...........((((((.(((....))).)))))).............)))................((((......))))......))) (-11.93 = -12.67 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:51 2006