Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 570,310 – 570,466 |
Length | 156 |
Max. P | 0.967925 |
Location | 570,310 – 570,402 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.31 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -18.08 |
Energy contribution | -18.78 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.20 |
Mean z-score | -2.05 |
Structure conservation index | 0.56 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.967925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 570310 92 + 23771897 UUGCGCCCGCUUAGCUGCCAAUUCCCAUCGGCU--------------------------UCU--CCUCGGGGAGCAGUACAUCAAAAUGUUUCUGCGGCAAUUAAGCGGAAUGAUCGCUG ..(((.((((((((.((((...((((...((..--------------------------...--))...))))((((.((((....))))..)))))))).))))))))......))).. ( -35.10) >DroPse_CAF1 844 102 + 1 UUGAGCAUUCUUAGCUGCCAAUUCGCUCGCGUUCAUUU-----UUGCU-----------UUUUUUGCCACCGCGGAGUACAUCAAAAUGUUG--GCGGCAAUUAAACAGAAUUCUCGCUG ..(((.(((((..(((((((....(((((((.......-----.))).-----------.....(((....)))))))((((....))))))--)))))........))))).))).... ( -23.80) >DroSec_CAF1 1750 92 + 1 UUGCGCCCGUUUAGCUGCCAAUUCCCAUCGGCU--------------------------UCU--CCUCGGGGAGCAGUACAUCAAAAUGUUUCUGCGGCAAUUAAGCGGAAUAAUCGCUG ..(((.((((((((.((((...((((...((..--------------------------...--))...))))((((.((((....))))..)))))))).))))))))......))).. ( -32.70) >DroSim_CAF1 1765 92 + 1 UUGCGCCCGCUUAGCUGCCAAUUCCCAUCGGCU--------------------------UCU--CCUCGGGGAGCAGUACAUCAAAAUGUUUCUGCGGCAAUUAAGCGGAAUGAUCGCUG ..(((.((((((((.((((...((((...((..--------------------------...--))...))))((((.((((....))))..)))))))).))))))))......))).. ( -35.10) >DroEre_CAF1 1803 118 + 1 UUGCGCCCGCUUAGCUGCCAAUUCCCAUCGGUUCCUCGGUUCCUCGGUUCCUCGGCUCCUCU--CCUCGGGGAGCAGUACAUCAAAAUGUUUGUGCGGCAAUUAAGCGGAAUGAUCGCUG ..(((.((((((((.((((..........((..((..(....)..))..))...(((((((.--....))))))).(((((..........))))))))).))))))))......))).. ( -41.50) >DroPer_CAF1 852 101 + 1 UUGAGCAUUCUUAGCUGCCAAUUCGCUCGCGUUCAUUU-----UUGCU-----------UU-UUUGCCACCGCGGAGUACAUCAAAAUGUUG--GCGGCAAUUAAACAGAAUUCUCGUUG ..(((.(((((..(((((((....(((((((.......-----.))).-----------..-..(((....)))))))((((....))))))--)))))........))))).))).... ( -23.80) >consensus UUGCGCCCGCUUAGCUGCCAAUUCCCAUCGGCU__________________________UCU__CCUCGGGGAGCAGUACAUCAAAAUGUUUCUGCGGCAAUUAAGCGGAAUGAUCGCUG ......((((((((.((((...((((...((.................................))...))))(((..((((....))))...))))))).))))))))........... (-18.08 = -18.78 + 0.70)
Location | 570,310 – 570,402 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.31 |
Mean single sequence MFE | -32.25 |
Consensus MFE | -17.25 |
Energy contribution | -18.20 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.12 |
Mean z-score | -1.98 |
Structure conservation index | 0.53 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 570310 92 - 23771897 CAGCGAUCAUUCCGCUUAAUUGCCGCAGAAACAUUUUGAUGUACUGCUCCCCGAGG--AGA--------------------------AGCCGAUGGGAAUUGGCAGCUAAGCGGGCGCAA ..(((.....((((((((.(((((((((..((((....)))).))))((((...((--...--------------------------..))...))))...))))).))))))))))).. ( -36.60) >DroPse_CAF1 844 102 - 1 CAGCGAGAAUUCUGUUUAAUUGCCGC--CAACAUUUUGAUGUACUCCGCGGUGGCAAAAAA-----------AGCAA-----AAAUGAACGCGAGCGAAUUGGCAGCUAAGAAUGCUCAA ..(((...(((.(((((..(((((((--(.((((....)))).......))))))))...)-----------)))).-----.)))...)))(((((..((((...))))...))))).. ( -24.90) >DroSec_CAF1 1750 92 - 1 CAGCGAUUAUUCCGCUUAAUUGCCGCAGAAACAUUUUGAUGUACUGCUCCCCGAGG--AGA--------------------------AGCCGAUGGGAAUUGGCAGCUAAACGGGCGCAA ..(((.....((((.(((.(((((((((..((((....)))).))))((((...((--...--------------------------..))...))))...))))).))).))))))).. ( -30.00) >DroSim_CAF1 1765 92 - 1 CAGCGAUCAUUCCGCUUAAUUGCCGCAGAAACAUUUUGAUGUACUGCUCCCCGAGG--AGA--------------------------AGCCGAUGGGAAUUGGCAGCUAAGCGGGCGCAA ..(((.....((((((((.(((((((((..((((....)))).))))((((...((--...--------------------------..))...))))...))))).))))))))))).. ( -36.60) >DroEre_CAF1 1803 118 - 1 CAGCGAUCAUUCCGCUUAAUUGCCGCACAAACAUUUUGAUGUACUGCUCCCCGAGG--AGAGGAGCCGAGGAACCGAGGAACCGAGGAACCGAUGGGAAUUGGCAGCUAAGCGGGCGCAA ..(((.....((((((((.((((((((...((((....))))..)))((((...((--...((..((..(....)..))..))......))...))))...))))).))))))))))).. ( -40.00) >DroPer_CAF1 852 101 - 1 CAACGAGAAUUCUGUUUAAUUGCCGC--CAACAUUUUGAUGUACUCCGCGGUGGCAAA-AA-----------AGCAA-----AAAUGAACGCGAGCGAAUUGGCAGCUAAGAAUGCUCAA ....(((.(((((((((..(((((((--(.((((....)))).......)))))))).-.)-----------)))..-----........((..((......)).))..))))).))).. ( -25.40) >consensus CAGCGAUCAUUCCGCUUAAUUGCCGCAGAAACAUUUUGAUGUACUGCUCCCCGAGG__AGA__________________________AACCGAUGGGAAUUGGCAGCUAAGCGGGCGCAA ..(((.....((((((((.((((((((...((((....))))..)))..........................................((....))....))))).))))))))))).. (-17.25 = -18.20 + 0.95)
Location | 570,362 – 570,466 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 88.99 |
Mean single sequence MFE | -38.48 |
Consensus MFE | -27.31 |
Energy contribution | -27.50 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.11 |
Mean z-score | -2.09 |
Structure conservation index | 0.71 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 570362 104 + 23771897 AUCAAAAUGUUUCUGCGGCAAUUAAGCGGAAUGAUCGCUGCCAAGGUGGCCGGAGGUGUGCG-------AAAGUGGUUUUCCAUGGAAG--GAAAUACCUUCGCGCCUCUUCC---- ..........((((((.........)))))).....((..(....)..)).(((((.(((((-------((...((((((((......)--)))).))))))))))..)))))---- ( -35.50) >DroSec_CAF1 1802 104 + 1 AUCAAAAUGUUUCUGCGGCAAUUAAGCGGAAUAAUCGCUGCCAAGGUGGCCGGAGGUGUGCG-------AAGGUGGUUUUCCAUGGAAG--GAAAUACCUUCGCGCCUCUUCC---- ..........((((((.........)))))).....((..(....)..)).(((((.(((((-------((((((.(((((....))))--)...)))))))))))..)))))---- ( -41.40) >DroSim_CAF1 1817 104 + 1 AUCAAAAUGUUUCUGCGGCAAUUAAGCGGAAUGAUCGCUGCCAAGGUGGCCGGAGGUGUGCG-------AAGGUGGUUUUCCAUGGAAG--GAAAUACCUUCGCGCCUCUUCC---- ..........((((((.........)))))).....((..(....)..)).(((((.(((((-------((((((.(((((....))))--)...)))))))))))..)))))---- ( -41.40) >DroEre_CAF1 1881 117 + 1 AUCAAAAUGUUUGUGCGGCAAUUAAGCGGAAUGAUCGCUGCCAAGGUGGCCGAAGGUGUGCGAAAUGCGAAAGUGGUUUUCCAUGAAAGUGGUUUUCCCCUUGCGCCUCUUCCCCCC ..........(((.(((((.((((.......)))).))))))))((.((..(((((.((((((...((....))((....((((....))))....))..)))))).))))))))). ( -35.60) >consensus AUCAAAAUGUUUCUGCGGCAAUUAAGCGGAAUGAUCGCUGCCAAGGUGGCCGGAGGUGUGCG_______AAAGUGGUUUUCCAUGGAAG__GAAAUACCUUCGCGCCUCUUCC____ ..............(((((.((((.......)))).)))))..(((.((((((((((((.............((((....))))..........))))))))).))).)))...... (-27.31 = -27.50 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:53 2006