Locus 2029

Sequence ID 3L_DroMel_CAF1
Location 5,589,665 – 5,589,755
Length 90
Max. P 0.546911
window3171

overview

Window 1

Location 5,589,665 – 5,589,755
Length 90
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 91.64
Mean single sequence MFE -19.81
Consensus MFE -16.19
Energy contribution -16.67
Covariance contribution 0.48
Combinations/Pair 1.04
Mean z-score -1.33
Structure conservation index 0.82
SVM decision value 0.03
SVM RNA-class probability 0.546911
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5589665 90 - 23771897
CGGUCGCCAAGAAGCAUUUUCCAAGAAAAUUAUCGAGGGAAAGGCGCAGAGCGAAAA-----AAACGCCAG-------UUUUAGGCAAACAUCGGAAAAGUU
((((.(((..(((((.((((((..((......))..))))))((((...........-----...)))).)-------)))).)))....))))........ ( -19.44)
>DroSec_CAF1 9140 97 - 1
CGGUCGCCAAGAAGCAUUUUCCAAGAAAAUUAUCGAGGGAAAGGCGCAAGGCAAAAA-----AAACGCCAGUAACAACUUUUAGGCAAGUAUCGGAAAAGUU
((((((((.....((.((((((..((......))..)))))).))....))).....-----....((((((....)))....)))..).))))........ ( -20.40)
>DroSim_CAF1 8559 97 - 1
CGGUCGCCAAGAAGCAUUUUCCAAGAAAAUUAUCGAGGGAAAGGCGCAAAGCGAAAA-----AAAAGCCAGUAACAACUUUUAGGCAAACAUCGGAAAAGUU
((((.(((.(((((..((((((..((......))..))))))(((............-----....)))........))))).)))....))))........ ( -18.69)
>DroEre_CAF1 10204 98 - 1
CGGUCGCCAAGAAGCAUUUUCCAAGAAAAUUAUCGAGGGAAAGGCGCAAGGCGAAAA----AAAAUGCCAGUAACAACUUUUAGGCAAACAUCGGAAAAGUU
((((((((.....((.((((((..((......))..)))))).))....)))))...----....(((((((....)))....))))....)))........ ( -22.90)
>DroYak_CAF1 7964 102 - 1
CGGUCGCCAAGAAGCAUUUUCCAAGAAAAUUAUCGAGGGAAAGGCGCAAAGCGAAAAAAAAAAAACGGCAGUAACAACUUUUAGGCAAACAUCGGAAAAGUU
.....(((.....((.((((((..((......))..)))))).))((...))..............)))......(((((((.((......))..))))))) ( -17.60)
>consensus
CGGUCGCCAAGAAGCAUUUUCCAAGAAAAUUAUCGAGGGAAAGGCGCAAAGCGAAAA_____AAACGCCAGUAACAACUUUUAGGCAAACAUCGGAAAAGUU
((((.(((.(((((..((((((..((......))..))))))((((...................))))........))))).)))....))))........ (-16.19 = -16.67 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:48 2006