Locus 2027

Sequence ID 3L_DroMel_CAF1
Location 5,585,657 – 5,585,749
Length 92
Max. P 0.858879
window3169

overview

Window 9

Location 5,585,657 – 5,585,749
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 97.10
Mean single sequence MFE -18.53
Consensus MFE -16.23
Energy contribution -16.57
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.88
SVM decision value 0.82
SVM RNA-class probability 0.858879
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5585657 92 + 23771897
AAACUUUUUCAAGCUGCGCACCAAUGGCAAAUACAACAAUGCCAACAAAACCGAAACGAAAGCCCAGCUCAGUAAAAAGAGCAAAUCAGUCU
...(((((((.(((((.((.....(((((..........))))).......((...))...)).)))))..).))))))............. ( -16.30)
>DroEre_CAF1 6436 92 + 1
AAACUUUUUCAAGCUGCGCGCCAAUGGCAAAUACAACAAUGCCAACAAAACUGAAACGAAAGCCCAGCUCAGUAAAAUGAGCAAAGCAGUCU
............(((((((.....(((((..........))))).((....))........))...(((((......)))))...))))).. ( -20.60)
>DroYak_CAF1 4210 92 + 1
AAACUUUUUCAAGCUGCGCGCCAAUGGCAAAUACAACAAUGCCAACAAAACUGAAACGAAAGCCCAGCUCAGUAAAAAGAGCAAAGCAGUCU
............(((((((.....(((((..........))))).((....))........))...((((........))))...))))).. ( -18.70)
>consensus
AAACUUUUUCAAGCUGCGCGCCAAUGGCAAAUACAACAAUGCCAACAAAACUGAAACGAAAGCCCAGCUCAGUAAAAAGAGCAAAGCAGUCU
............(((((.......(((((..........)))))............(....)....((((........))))...))))).. (-16.23 = -16.57 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:46 2006