Locus 2024

Sequence ID 3L_DroMel_CAF1
Location 5,577,771 – 5,577,885
Length 114
Max. P 0.584419
window3164

overview

Window 4

Location 5,577,771 – 5,577,885
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.20
Mean single sequence MFE -36.56
Consensus MFE -31.72
Energy contribution -32.32
Covariance contribution 0.60
Combinations/Pair 1.06
Mean z-score -1.32
Structure conservation index 0.87
SVM decision value 0.10
SVM RNA-class probability 0.584419
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5577771 114 - 23771897
----UAUUUCUGCUGUCGGCAAAUCUGAGUGUUUGCCACAA--AACUGUUUGAAAACGCAAUCCCAGCGAGGGCAACCGAAUCAGGCCGGCAGAGCGAGGUCACCAGGAAGACGCGCAAA
----....(((((((..(((((((......)))))))....--....((((((...(((.......))).((....))...)))))))))))))(((..(((........))).)))... ( -38.70)
>DroSec_CAF1 2039 114 - 1
----UAUUUCUGCUGUCGGCAAAUCUGAGUGUUUGCCACAA--AACUGUUUGAAAACGCAAUCCCAGCGAGGGCAACCGAAUCAGGCCGGCAGAGCGAAGUCACCAGGAAGACGCGCAAU
----....(((((((..(((((((......)))))))....--....((((((...(((.......))).((....))...)))))))))))))(((..(((........))).)))... ( -37.80)
>DroSim_CAF1 2389 114 - 1
----UAUUUCUGCUGUCGGCAAAUCGGAGUGUUUGCCACAA--AACUGUUUGAAAACGCAAUCCCAGCGAGGGCAACCGAAUCCGGCGGGCAGAGCGAGGUCACCAGGAAGACGCGCAAU
----....(((((((((((....((((.((((((...(((.--...)))....))))))...(((.....)))...))))..))))).))))))(((..(((........))).)))... ( -37.70)
>DroEre_CAF1 2118 118 - 1
GAAUUAUUUCUGGUGUCGGCAAAUUUGUGUGUUUGCCACAA--AACUGUUUGAAAACGCAAUCUUAGCGAGGGAUAUUGAACCAGGCCGGCAGAGCGAGGUCACCGGGAAGACGCGCAAU
......(((((((((.((((((((......)))))))....--..((((..(....(((.......))).((.........))...)..))))......).))))))))).......... ( -31.50)
>DroYak_CAF1 2128 120 - 1
GAAUUAUUUCUGCUGUCGGCAAAUCUGUGUGUUUGCCACAAAAAACGAUUUGAAAGCGCAAUCUUAGCGAGGGCAAUCGAGUCAGGCCGGCAGAGCGAGGUCACCCGAAAGACGCGCAAU
........((((((((((((((((......))))))).........(((((((....((..((.....))..))..))))))).)).)))))))(((..(((........))).)))... ( -37.10)
>consensus
____UAUUUCUGCUGUCGGCAAAUCUGAGUGUUUGCCACAA__AACUGUUUGAAAACGCAAUCCCAGCGAGGGCAACCGAAUCAGGCCGGCAGAGCGAGGUCACCAGGAAGACGCGCAAU
........(((((((..(((((((......)))))))..........((((((...(((.......))).((....))...)))))))))))))(((..(((........))).)))... (-31.72 = -32.32 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:41 2006