Locus 2022

Sequence ID 3L_DroMel_CAF1
Location 5,571,269 – 5,571,367
Length 98
Max. P 0.549094
window3161

overview

Window 1

Location 5,571,269 – 5,571,367
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 91.47
Mean single sequence MFE -20.77
Consensus MFE -16.00
Energy contribution -16.33
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 0.77
SVM decision value 0.03
SVM RNA-class probability 0.549094
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5571269 98 - 23771897
AUUGUUCUUAUUAAUAUAAUCAUAUUUAAUCGGCCAGCUAUUGUCUGCUUAUAAUCAGACACUAUAAGUACAUUUGGUUUUUUAACAUUGAUAGGAAA
....(((((((((((..........((((..((((((....(((..(((((((.........)))))))))).))))))..)))).))))))))))). ( -16.40)
>DroEre_CAF1 4450 96 - 1
AUGGUUCUUAUUAAUAUAAUCAGAUUUAAUCGGGCUCUUAUUGUCUGCUUAUAAGCAGACACUAUAAGUACAUUUGGUU--UUAACAUUGAUAGGAAA
....(((((((((((..((((((((......(..((..((.((((((((....)))))))).))..))..)))))))))--.....))))))))))). ( -26.30)
>DroYak_CAF1 4549 97 - 1
AUUGUUCUUAUUAAUAUAAUCAGCUUUAAUCGGGCUUUCAUUGUCUGCCUAUAAUCAGACACUAUAAGUACAUUUGGUU-UUUAACAUUGAUAGGAAA
....(((((((((((......((((..(((.(..(((....((((((........))))))....)))..)))).))))-......))))))))))). ( -19.60)
>consensus
AUUGUUCUUAUUAAUAUAAUCAGAUUUAAUCGGGCUCUUAUUGUCUGCUUAUAAUCAGACACUAUAAGUACAUUUGGUU_UUUAACAUUGAUAGGAAA
....(((((((((((................(..((.....((((((........)))))).....))..).....(((....)))))))))))))). (-16.00 = -16.33 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:38 2006