Locus 202

Sequence ID 3L_DroMel_CAF1
Location 569,260 – 569,380
Length 120
Max. P 0.972209
window297

overview

Window 7

Location 569,260 – 569,380
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.42
Mean single sequence MFE -26.95
Consensus MFE -25.16
Energy contribution -25.23
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -2.37
Structure conservation index 0.93
SVM decision value 1.69
SVM RNA-class probability 0.972209
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 569260 120 + 23771897
AGACCAAUAAUCGAAUUAUUCGGCAUAAGAAACCCCCAGCGGAUCGCACAUCCAUGGUGCGAUCGCCGCCAUCUAUCAUCCCACCUAUCAUAGAUCUUUCCCUCCUUGUGCUUACGCCAU
...........(((.....)))(((((((.........(((((((((((.......)))))))..)))).((((((.((.......)).)))))).........)))))))......... ( -27.10)
>DroSec_CAF1 699 120 + 1
AGACCAAUAAUCGAAUUAUUCGGCAUAAGAAACCCCCAGCGGAUCGCACAUCCAUGGUGCGAUCGCCGCCAUCUAUCAUCCCACCUAUCAUAGAUCUUUCCCUCCUUGUGCUUACGCCAU
...........(((.....)))(((((((.........(((((((((((.......)))))))..)))).((((((.((.......)).)))))).........)))))))......... ( -27.10)
>DroSim_CAF1 704 120 + 1
AGACCAAUAAUCGAAUUAUUCGGCAUAAGAAACCCCCAGCGGAUCGCACAUCCAUGGUGCGAUCGCCGCCAUCUAUCAUCCCACCUAUCAUAGAUCUUUCCCUCCUUGUGCUUACGCCAU
...........(((.....)))(((((((.........(((((((((((.......)))))))..)))).((((((.((.......)).)))))).........)))))))......... ( -27.10)
>DroEre_CAF1 729 119 + 1
ACGCCAAUAAUGGAAUUAUUCGGCAUAAGAAACC-CCACCGGAUCGCACACUCAAAGUGCGAUCGUCGCCAUCUAUCAUCCCACCUAUCAUAGAUCUUUCCCUCCUUGUGCUUGCGCCAU
.(((.......(((....)))((((((((.....-......((((((((.......))))))))......((((((.((.......)).)))))).........)))))))).))).... ( -26.50)
>consensus
AGACCAAUAAUCGAAUUAUUCGGCAUAAGAAACCCCCAGCGGAUCGCACAUCCAUGGUGCGAUCGCCGCCAUCUAUCAUCCCACCUAUCAUAGAUCUUUCCCUCCUUGUGCUUACGCCAU
.....................((((((((.........(((((((((((.......)))))))..)))).((((((.((.......)).)))))).........))))))))........ (-25.16 = -25.23 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:49 2006