Locus 2019

Sequence ID 3L_DroMel_CAF1
Location 5,558,008 – 5,558,099
Length 91
Max. P 0.794992
window3157

overview

Window 7

Location 5,558,008 – 5,558,099
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.06
Mean single sequence MFE -37.88
Consensus MFE -27.58
Energy contribution -28.37
Covariance contribution 0.78
Combinations/Pair 1.23
Mean z-score -1.76
Structure conservation index 0.73
SVM decision value 0.60
SVM RNA-class probability 0.794992
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5558008 91 - 23771897
CUGG----------GAUGAUAAUGGGGCGGGGUCACCACCUCGCCCGGUUCCAGACUGUUGGUGUCAUUGUCCUGGAGAUCCUCCGGGGGCUUCAACUGUU-
((((----------(......((.(((((((((....))))))))).)))))))((.(((((.(((.....(((((((...)))))))))).))))).)).- ( -39.40)
>DroSec_CAF1 21978 91 - 1
CUGG----------GAUGAUAAUGGGGCGGGGUCACCACCUCGCCCGGUUCCAGACUGUUGGUGUCAUUGUCCUGGAGCUCCUCCGUUGGCUUUGACUGCU-
((((----------(......((.(((((((((....))))))))).)))))))......(((((((..(((.(((((...)))))..)))..)))).)))- ( -36.10)
>DroSim_CAF1 22385 91 - 1
CUGG----------GAUGAUAAUGGGGCGGGGUCACCACCUCGCCCGGUUCCAGACUGUUGGUGUCAUUGUCCUGGAGCUCCUCCGGUGGCUUUGACUGUU-
((((----------(......((.(((((((((....))))))))).))))))).........((((..(((((((((...)))))).)))..))))....- ( -40.00)
>DroEre_CAF1 22390 91 - 1
CCGG----------GGUGAUGAUGGGGCGGGGUCACUACCUCGCCUGGUUCCAGACUAUUGGUGUCAUUGUCCUGGAGAUCCUCCGGUGGCUUCGCCUGUU-
((((----------((..(((((.(((((((((....)))))))))....((((....)))).)))))..)))))).........((((....))))....- ( -38.50)
>DroYak_CAF1 23562 91 - 1
CCAG----------GGUUAUGAUGGGGCGGGGUCACCACCUCGCCGGGUUCCAGACUAUUGGUGUCAUUGUCCUGGAGAUCCUCCGGUGGCUUCGACUGUU-
((((----------((((..(((..((((((((....))))))))..)))...)))).)))).(((...(((((((((...)))))).)))...)))....- ( -33.10)
>DroPer_CAF1 28134 101 - 1
CUAGCGCCUCCGUGGAUGA-GGUGGGGCGGGGUUACCACCUCGCCCGGCUCCAGGCUGCUGGUGUCUCCAUCUUGCAAUUCAUCGAUUGCCCUUAUAUGAUG
((((((((((....))((.-.((.(((((((((....))))))))).))..))))).))))).(((........((((((....))))))........))). ( -40.19)
>consensus
CUGG__________GAUGAUAAUGGGGCGGGGUCACCACCUCGCCCGGUUCCAGACUGUUGGUGUCAUUGUCCUGGAGAUCCUCCGGUGGCUUCGACUGUU_
..............(((((((((.(((((((((....))))))))).)))((((....)))).))))))(((((((((...)))))).)))........... (-27.58 = -28.37 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:34 2006